Authors: Type:

2020

  • [DOI] J. Schulte-Schrepping, N. Reusch, D. Paclik, K. Baßler, S. Schlickeiser, B. Zhang, B. Krämer, T. Krammer, S. Brumhard, L. Bonaguro, E. D. Domenico, D. Wendisch, M. Grasshoff, T. S. Kapellos, M. Beckstette, T. Pecht, A. Saglam, O. Dietrich, H. E. Mei, A. R. Schulz, C. Conrad, D. Kunkel, E. Vafadarnejad, C. Xu, A. Horne, M. Herbert, A. Drews, C. Thibeault, M. Pfeiffer, S. Hippenstiel, A. Hocke, H. Müller-Redetzky, K. Heim, F. Machleidt, A. Uhrig, L. B. de Jarcy, L. Jürgens, M. Stegemann, C. R. Glösenkamp, H. Volk, C. Goffinet, M. Landthaler, E. Wyler, P. Georg, M. Schneider, C. Dang-Heine, N. Neuwinger, K. Kappert, R. Tauber, V. Corman, J. Raabe, K. M. Kaiser, M. T. Vinh, G. Rieke, C. Meisel, T. Ulas, M. Becker, R. Geffers, M. Witzenrath, C. Drosten, N. Suttorp, C. von Kalle, F. Kurth, K. Händler, J. L. Schultze, A. C. Aschenbrenner, Y. Li, J. Nattermann, B. Sawitzki, A. Saliba, L. E. Sander, A. Angelov, R. Bals, A. Bartholomäus, A. Becker, D. Bezdan, E. Bonifacio, P. Bork, T. Clavel, M. Colome-Tatche, A. Diefenbach, A. Dilthey, N. Fischer, K. Förstner, J. Frick, J. Gagneur, A. Goesmann, T. Hain, M. Hummel, S. Janssen, J. Kalinowski, R. Kallies, B. Kehr, A. Keller, S. Kim-Hellmuth, C. Klein, O. Kohlbacher, J. O. Korbel, I. Kurth, M. Landthaler, Y. Li, K. Ludwig, O. Makarewicz, M. Marz, A. McHardy, C. Mertes, M. Nöthen, P. Nürnberg, U. Ohler, S. Ossowski, J. Overmann, S. Peter, K. Pfeffer, A. R. Poetsch, A. Pühler, N. Rajewsky, M. Ralser, O. Rieß, S. Ripke, U. N. da Rocha, P. Rosenstiel, A. Saliba, L. E. Sander, B. Sawitzki, P. Schiffer, E. Schulte, J. L. Schultze, A. Sczyrba, O. Stegle, J. Stoye, F. Theis, J. Vehreschild, J. Vogel, M. von Kleist, A. Walker, J. Walter, D. Wieczorek, and J. Ziebuhr, “Severe COVID-19 is marked by a dysregulated myeloid cell compartment,” Cell, 2020.
    [Bibtex]
    @Article{Schulte-Schrepping:20,
    author = {Jonas Schulte-Schrepping and Nico Reusch and Daniela Paclik and Kevin Ba{\ss}ler and Stephan Schlickeiser and Bowen Zhang and Benjamin Krämer and Tobias Krammer and Sophia Brumhard and Lorenzo Bonaguro and Elena De Domenico and Daniel Wendisch and Martin Grasshoff and Theodore S. Kapellos and Michael Beckstette and Tal Pecht and Adem Saglam and Oliver Dietrich and Henrik E. Mei and Axel R. Schulz and Claudia Conrad and D{\'{e}}sir{\'{e}}e Kunkel and Ehsan Vafadarnejad and Cheng-Jian Xu and Arik Horne and Miriam Herbert and Anna Drews and Charlotte Thibeault and Moritz Pfeiffer and Stefan Hippenstiel and Andreas Hocke and Holger Müller-Redetzky and Katrin-Moira Heim and Felix Machleidt and Alexander Uhrig and Laure Bosquillon de Jarcy and Linda Jürgens and Miriam Stegemann and Christoph R. Glösenkamp and Hans-Dieter Volk and Christine Goffinet and Markus Landthaler and Emanuel Wyler and Philipp Georg and Maria Schneider and Chantip Dang-Heine and Nick Neuwinger and Kai Kappert and Rudolf Tauber and Victor Corman and Jan Raabe and Kim Melanie Kaiser and Michael To Vinh and Gereon Rieke and Christian Meisel and Thomas Ulas and Matthias Becker and Robert Geffers and Martin Witzenrath and Christian Drosten and Norbert Suttorp and Christof von Kalle and Florian Kurth and Kristian Händler and Joachim L. Schultze and Anna C. Aschenbrenner and Yang Li and Jacob Nattermann and Birgit Sawitzki and Antoine-Emmanuel Saliba and Leif Erik Sander and Angel Angelov and Robert Bals and Alexander Bartholomäus and Anke Becker and Daniela Bezdan and Ezio Bonifacio and Peer Bork and Thomas Clavel and Maria Colome-Tatche and Andreas Diefenbach and Alexander Dilthey and Nicole Fischer and Konrad Förstner and Julia-Stefanie Frick and Julien Gagneur and Alexander Goesmann and Torsten Hain and Michael Hummel and Stefan Janssen and Jörn Kalinowski and Ren{\'{e}} Kallies and Birte Kehr and Andreas Keller and Sarah Kim-Hellmuth and Christoph Klein and Oliver Kohlbacher and Jan O. Korbel and Ingo Kurth and Markus Landthaler and Yang Li and Kerstin Ludwig and Oliwia Makarewicz and Manja Marz and Alice McHardy and Christian Mertes and Markus Nöthen and Peter Nürnberg and Uwe Ohler and Stephan Ossowski and Jörg Overmann and Silke Peter and Klaus Pfeffer and Anna R. Poetsch and Alfred Pühler and Nikolaus Rajewsky and Markus Ralser and Olaf Rie{\ss} and Stephan Ripke and Ulisses Nunes da Rocha and Philip Rosenstiel and Antoine-Emmanuel Saliba and Leif Erik Sander and Birgit Sawitzki and Philipp Schiffer and Eva-Christina Schulte and Joachim L. Schultze and Alexander Sczyrba and Oliver Stegle and Jens Stoye and Fabian Theis and Janne Vehreschild and Jörg Vogel and Max von Kleist and Andreas Walker and Jörn Walter and Dagmar Wieczorek and John Ziebuhr},
    title = {Severe {COVID}-19 Is Marked by a Dysregulated Myeloid Cell Compartment},
    journal = {Cell},
    year = {2020},
    doi = {10.1016/j.cell.2020.08.001},
    publisher = {Elsevier {BV}},
    }
  • [DOI] O. A. MacLean, R. J. Orton, J. B. Singer, and D. L. Robertson, “No evidence for distinct types in the evolution of SARS-CoV-2,” Virus Evol, vol. 6, iss. 1, 2020.
    [Bibtex]
    @Article{MacLean:20a,
    author = {Oscar A MacLean and Richard J Orton and Joshua B Singer and David L Robertson},
    title = {No evidence for distinct types in the evolution of {SARS}-{CoV}-2},
    journal = {{Virus Evol}},
    year = {2020},
    volume = {6},
    number = {1},
    doi = {10.1093/ve/veaa034},
    publisher = {Oxford University Press ({OUP})},
    }
  • [DOI] L. Ulrich, K. Wernike, D. Hoffmann, T. C. Mettenleiter, and M. Beer, “Experimental infection of cattle with SARS-CoV-2,” bioRxiv, 2020.
    [Bibtex]
    @Article{Ulrich:20,
    author = {Lorenz Ulrich and Kerstin Wernike and Donata Hoffmann and Thomas C. Mettenleiter and Martin Beer},
    title = {Experimental infection of cattle with {SARS}-{CoV}-2},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.25.254474},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] C. M. Freuling, A. Breithaupt, T. Müller, J. Sehl, A. Balkema-Buschmann, M. Rissmann, A. Klein, C. Wylezich, D. Höper, K. Wernike, A. Aebischer, D. Hoffmann, V. Friedrichs, A. Dorhoi, M. H. Groschup, M. Beer, and T. C. Mettenleiter, “Susceptibility of raccoon dogs for experimental SARS-CoV-2 infection,” bioRxiv, 2020.
    [Bibtex]
    @Article{Freuling:20,
    author = {Conrad M. Freuling and Angele Breithaupt and Thomas Müller and Julia Sehl and Anne Balkema-Buschmann and Melanie Rissmann and Antonia Klein and Claudia Wylezich and Dirk Höper and Kerstin Wernike and Andrea Aebischer and Donata Hoffmann and Virginia Friedrichs and Anca Dorhoi and Martin H. Groschup and Martin Beer and Thomas C. Mettenleiter},
    title = {Susceptibility of raccoon dogs for experimental {SARS}-{CoV}-2 infection},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.19.256800},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Cacciabue, P. Aguilera, M. I. Gismondi, and O. Taboga, “Covidex: an ultrafast and accurate tool for virus subtyping,” bioRxiv, 2020.
    [Bibtex]
    @Article{Cacciabue:20,
    author = {Marco Cacciabue and Pablo Aguilera and Mar{\'{\i}}a In{\'{e}}s Gismondi and Oscar Taboga},
    title = {Covidex: an ultrafast and accurate tool for virus subtyping},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.21.261347},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] N. Han, W. Hwang, K. Tzelepis, P. Schmerer, E. Yankova, M. MacMahon, W. Lei, N. M. Katritsis, A. Liu, A. Schuldt, R. Harris, K. Chapman, F. McCaughan, F. Weber, and T. Kouzarides, “Identification of SARS-CoV-2 induced pathways reveal drug repurposing strategies,” bioRxiv, 2020.
    [Bibtex]
    @Article{Han:20,
    author = {Namshik Han and Woochang Hwang and Kostas Tzelepis and Patrick Schmerer and Eliza Yankova and Meabh MacMahon and Winnie Lei and Nicholas M Katritsis and Anika Liu and Alison Schuldt and Rebecca Harris and Kathryn Chapman and Frank McCaughan and Friedemann Weber and Tony Kouzarides},
    title = {Identification of {SARS}-{CoV}-2 induced pathways reveal drug repurposing strategies},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.24.265496},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Rueca, B. Bartolini, C. E. M. Gruber, A. Piralla, F. Baldanti, E. Giombini, F. Messina, L. Marchioni, G. Ippolito, A. D. Caro, and M. R. Capobianchi, “Compartmentalized replication of SARS-Cov-2 in upper vs. lower respiratory tract assessed by whole genome quasispecies analysis,” Microorganisms, vol. 8, iss. 9, p. 1302, 2020.
    [Bibtex]
    @Article{Rueca:20,
    author = {Martina Rueca and Barbara Bartolini and Cesare Ernesto Maria Gruber and Antonio Piralla and Fausto Baldanti and Emanuela Giombini and Francesco Messina and Luisa Marchioni and Giuseppe Ippolito and Antonino Di Caro and Maria Rosaria Capobianchi},
    title = {Compartmentalized Replication of {SARS}-{C}ov-2 in Upper vs. Lower Respiratory Tract Assessed by Whole Genome Quasispecies Analysis},
    journal = {Microorganisms},
    year = {2020},
    volume = {8},
    number = {9},
    pages = {1302},
    doi = {10.3390/microorganisms8091302},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] K. Schlottau, M. Rissmann, A. Graaf, J. Schön, J. Sehl, C. Wylezich, D. Höper, T. C. Mettenleiter, A. Balkema-Buschmann, T. Harder, C. Grund, D. Hoffmann, A. Breithaupt, and M. Beer, “SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study,” Lancet Microbe, vol. 1, iss. 5, p. e218–e225, 2020.
    [Bibtex]
    @Article{Schlottau:20,
    author = {Kore Schlottau and Melanie Rissmann and Annika Graaf and Jacob Schön and Julia Sehl and Claudia Wylezich and Dirk Höper and Thomas C Mettenleiter and Anne Balkema-Buschmann and Timm Harder and Christian Grund and Donata Hoffmann and Angele Breithaupt and Martin Beer},
    title = {{SARS}-{CoV}-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study},
    journal = {{Lancet Microbe}},
    year = {2020},
    volume = {1},
    number = {5},
    pages = {e218--e225},
    doi = {10.1016/s2666-5247(20)30089-6},
    publisher = {Elsevier {BV}},
    }
  • [DOI] K. Decock, K. Debackere, A. M. Vandamme, and B. V. Looy, “Scenario-driven forecasting: modeling peaks and paths. insights from the COVID-19 pandemic in Belgium,” Scientometrics, vol. 124, iss. 3, p. 2703–2715, 2020.
    [Bibtex]
    @Article{Decock:20,
    author = {Kristof Decock and Koenraad Debackere and Anne- Mieke Vandamme and Bart Van Looy},
    title = {Scenario-driven forecasting: modeling peaks and paths. Insights from the {COVID}-19 pandemic in {B}elgium},
    journal = {Scientometrics},
    year = {2020},
    volume = {124},
    number = {3},
    pages = {2703--2715},
    doi = {10.1007/s11192-020-03591-6},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] P. V’kovski, S. Steiner, and V. Thiel, “Proximity labeling for the identification of Coronavirus-host protein interactions,” in Coronaviruses, Springer US, 2020, p. 187–204.
    [Bibtex]
    @InCollection{Vkovski:20a,
    author = {Philip V'kovski and Silvio Steiner and Volker Thiel},
    title = {Proximity Labeling for the Identification of {C}oronavirus-Host Protein Interactions},
    booktitle = {Coronaviruses},
    publisher = {Springer {US}},
    year = {2020},
    pages = {187--204},
    doi = {10.1007/978-1-0716-0900-2_14},
    }
  • [DOI] T. T. N. Thao, F. Labroussaa, N. Ebert, J. Jores, and V. Thiel, “In-yeast assembly of coronavirus infectious cDNA clones using a synthetic genomics pipeline,” in Coronaviruses, Springer US, 2020, p. 167–184.
    [Bibtex]
    @InCollection{Thao:20a,
    author = {Tran Thi Nhu Thao and Fabien Labroussaa and Nadine Ebert and Joerg Jores and Volker Thiel},
    title = {In-Yeast Assembly of Coronavirus Infectious {cDNA} Clones Using a Synthetic Genomics Pipeline},
    booktitle = {Coronaviruses},
    publisher = {Springer {US}},
    year = {2020},
    pages = {167--184},
    doi = {10.1007/978-1-0716-0900-2_13},
    }
  • [DOI] A. C. R. Hoste, A. Venteo, A. Fresco-Taboada, I. Tapia, A. Monedero, L. López, M. F. Jebbink, E. Pérez-Ramírez, M. A. Jimenez-Clavero, M. Almonacid, P. Muñoz, J. Guinea, C. Vela, L. van der Hoek, P. Rueda, and P. Sastre, “Two serological approaches for detection of antibodies to SARS-CoV-2 in different scenarios: a screening tool and a point-of-care test,” Diagn Microbiol Infect Dis, vol. 98, iss. 4, p. 115167, 2020.
    [Bibtex]
    @Article{Hoste:20,
    author = {Alexis C.R. Hoste and Angel Venteo and Alba Fresco-Taboada and Istar Tapia and Alejandro Monedero and Lissette L{\'{o}}pez and Maarten F. Jebbink and Elisa P{\'{e}}rez-Ram{\'{\i}}rez and Miguel Angel Jimenez-Clavero and Mercedes Almonacid and Patricia Mu{\~{n}}oz and Jesus Guinea and Carmen Vela and Lia van der Hoek and Paloma Rueda and Patricia Sastre},
    title = {Two serological approaches for detection of antibodies to {SARS}-{CoV}-2 in different scenarios: a screening tool and a point-of-care test},
    journal = {{Diagn Microbiol Infect Dis}},
    year = {2020},
    volume = {98},
    number = {4},
    pages = {115167},
    doi = {10.1016/j.diagmicrobio.2020.115167},
    publisher = {Elsevier {BV}},
    }
  • [DOI] L. F. Ludwig-Begall, C. Wielick, L. Dams, H. Nauwynck, P-F. Demeuldre, A. Napp, J. Laperre, E. Haubruge, and E. Thiry, “The use of germicidal ultraviolet light, vaporized hydrogen peroxide and dry heat to decontaminate face masks and filtering respirators contaminated with a SARS-CoV-2 surrogate virus,” J Hosp Infect, 2020.
    [Bibtex]
    @Article{Ludwig-Begall:20,
    author = {L.F. Ludwig-Begall and C. Wielick and L. Dams and H. Nauwynck and P-F. Demeuldre and A. Napp and J. Laperre and E. Haubruge and E. Thiry},
    title = {The use of germicidal ultraviolet light, vaporized hydrogen peroxide and dry heat to decontaminate face masks and filtering respirators contaminated with a {SARS}-{CoV}-2 surrogate virus},
    journal = {{J Hosp Infect}},
    year = {2020},
    doi = {10.1016/j.jhin.2020.08.025},
    publisher = {Elsevier {BV}},
    }
  • K. Schubert, E. D. Karousis, A. Jomaa, A. Scaiola, B. Echeverria, L. Gurzeler, M. Leibundgut, V. Thiel, O. Mühlemann, and N. Ban, “SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation,” Nat Struct Mol Biol, p. 1–8, 2020.
    [Bibtex]
    @Article{Schubert:20,
    author = {Schubert, Katharina and Karousis, Evangelos D and Jomaa, Ahmad and Scaiola, Alain and Echeverria, Blanca and Gurzeler, Lukas-Adrian and Leibundgut, Marc and Thiel, Volker and M{\"u}hlemann, Oliver and Ban, Nenad},
    title = {{SARS}-{CoV}-2 {Nsp1} binds the ribosomal {mRNA} channel to inhibit translation},
    journal = {{Nat Struct Mol Biol}},
    year = {2020},
    pages = {1--8},
    publisher = {Nature Publishing Group},
    }
  • [DOI] A. Shannon, B. Selisko, N. Le, J. Huchting, F. Touret, G. Piorkowski, V. Fattorini, F. Ferron, E. Decroly, C. Meier, B. Coutard, O. Peersen, and B. Canard, “Rapid incorporation of Favipiravir by the fast and permissive viral RNA polymerase complex results in SARS-CoV-2 lethal mutagenesis,” Nat Commun, vol. 11, iss. 1, 2020.
    [Bibtex]
    @Article{Shannon:20a,
    author = {Ashleigh Shannon and Barbara Selisko and Nhung-Thi-Tuyet Le and Johanna Huchting and Franck Touret and G{\'{e}}raldine Piorkowski and V{\'{e}}ronique Fattorini and Fran{\c{c}}ois Ferron and Etienne Decroly and Chris Meier and Bruno Coutard and Olve Peersen and Bruno Canard},
    title = {Rapid incorporation of {F}avipiravir by the fast and permissive viral {RNA} polymerase complex results in {SARS}-{CoV}-2 lethal mutagenesis},
    journal = {{Nat Commun}},
    year = {2020},
    volume = {11},
    number = {1},
    doi = {10.1038/s41467-020-18463-z},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] D. Polo, M. Quintela-Baluja, A. Corbishley, D. L. Jones, A. C. Singer, D. W. Graham, and J. L. Romalde, “Making waves: wastewater-based epidemiology for COVID-19 – approaches and challenges for surveillance and prediction,” Water Res, vol. 186, p. 116404, 2020.
    [Bibtex]
    @Article{Polo:20,
    author = {David Polo and Marcos Quintela-Baluja and Alexander Corbishley and Davey L. Jones and Andrew C. Singer and David W. Graham and Jes{\'{u}}s L. Romalde},
    title = {Making waves: Wastewater-based epidemiology for {COVID}-19 -- approaches and challenges for surveillance and prediction},
    journal = {{Water Res}},
    year = {2020},
    volume = {186},
    pages = {116404},
    doi = {10.1016/j.watres.2020.116404},
    publisher = {Elsevier {BV}},
    }
  • [DOI] Y. Konno, I. Kimura, K. Uriu, M. Fukushi, T. Irie, Y. Koyanagi, D. Sauter, R. J. Gifford, S. Nakagawa, and K. Sato, “SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is increased by a naturally occurring elongation variant,” Cell Rep, vol. 32, iss. 12, p. 108185, 2020.
    [Bibtex]
    @Article{Konno:20,
    author = {Yoriyuki Konno and Izumi Kimura and Keiya Uriu and Masaya Fukushi and Takashi Irie and Yoshio Koyanagi and Daniel Sauter and Robert J. Gifford and So Nakagawa and Kei Sato},
    title = {{SARS}-{CoV}-2 {ORF}3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant},
    journal = {{Cell Rep}},
    year = {2020},
    volume = {32},
    number = {12},
    pages = {108185},
    doi = {10.1016/j.celrep.2020.108185},
    publisher = {Elsevier {BV}},
    }
  • [DOI] A. Welker, C. Kersten, C. Müller, R. Madhugiri, C. Zimmer, P. Müller, R. A. Zimmermann, S. Hammerschmidt, H. Maus, J. Ziebuhr, C. Sotriffer, and T. Schirmeister, “SAR of novel benzamides and isoindolines, designed as SARS-CoV protease inhibitors – effective against SARS-CoV-2,” ChemMedChem, 2020.
    [Bibtex]
    @Article{Welker:20,
    author = {Armin Welker and Christian Kersten and Christin Müller and Ramakanth Madhugiri and Collin Zimmer and Patrick Müller and Robert Alexander Zimmermann and Stefan Hammerschmidt and Hannah Maus and John Ziebuhr and Christoph Sotriffer and Tanja Schirmeister},
    title = {{SAR} of novel benzamides and isoindolines, designed as {SARS}-{CoV} protease inhibitors {\textendash} effective against {SARS}-{CoV}-2},
    journal = {{ChemMedChem}},
    year = {2020},
    doi = {10.1002/cmdc.202000548},
    publisher = {Wiley},
    }
  • [DOI] A. W. D. Edridge, J. Kaczorowska, A. C. R. Hoste, M. Bakker, M. Klein, K. Loens, M. F. Jebbink, A. Matser, C. M. Kinsella, P. Rueda, M. Ieven, H. Goossens, M. Prins, P. Sastre, M. Deijs, and L. van der Hoek, “Seasonal coronavirus protective immunity is short-lasting,” Nat Med, 2020.
    [Bibtex]
    @Article{Edridge:20,
    author = {Arthur W. D. Edridge and Joanna Kaczorowska and Alexis C. R. Hoste and Margreet Bakker and Michelle Klein and Katherine Loens and Maarten F. Jebbink and Amy Matser and Cormac M. Kinsella and Paloma Rueda and Margareta Ieven and Herman Goossens and Maria Prins and Patricia Sastre and Martin Deijs and Lia van der Hoek},
    title = {Seasonal coronavirus protective immunity is short-lasting},
    journal = {{Nat Med}},
    year = {2020},
    doi = {10.1038/s41591-020-1083-1},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] E. M. L. Scerri, D. Kühnert, J. Blinkhorn, H. S. Groucutt, P. Roberts, K. Nicoll, A. Zerboni, E. A. Orijemie, H. Barton, I. Candy, S. T. Goldstein, J. Hawks, K. Niang, D. N’Dah, M. D. Petraglia, and N. C. Vella, “Field-based sciences must transform in response to COVID-19,” Nat Ecol Evol, 2020.
    [Bibtex]
    @Article{Scerri:20,
    author = {Eleanor M. L. Scerri and Denise Kühnert and James Blinkhorn and Huw S. Groucutt and Patrick Roberts and Kathleen Nicoll and Andrea Zerboni and Emuobosa Akpo Orijemie and Huw Barton and Ian Candy and Steven T. Goldstein and John Hawks and Khady Niang and Didier N'Dah and Michael D. Petraglia and Nicholas C. Vella},
    title = {Field-based sciences must transform in response to {COVID}-19},
    journal = {{Nat Ecol Evol}},
    year = {2020},
    doi = {10.1038/s41559-020-01317-8},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] C. Muñoz-Fontela, W. E. Dowling, S. G. P. Funnell, P. Gsell, X. R. Balta, R. A. Albrecht, H. Andersen, R. S. Baric, M. W. Carroll, M. Cavaleri, C. Qin, I. Crozier, K. Dallmeier, L. de Waal, E. de Wit, L. Delang, E. Dohm, P. W. Duprex, D. Falzarano, C. L. Finch, M. B. Frieman, B. S. Graham, L. Gralinski, K. Guilfoyle, B. L. Haagmans, G. A. Hamilton, A. L. Hartman, S. Herfst, S. J. F. Kaptein, W. Klimstra, I. Knezevic, P. R. Krause, J. H. Kuhn, R. L. Grand, M. Lewis, W. Liu, P. Maisonnasse, A. K. McElroy, V. Munster, N. Oreshkova, A. L. Rasmussen, J. Rocha-Pereira, B. Rockx, E. Rodríguez, T. Rogers, F. J. Salguero, M. Schotsaert, K. J. Stittelaar, H. J. Thibaut, C. Tseng, J. Vergara-Alert, M. Beer, T. Brasel, J. F. W. Chan, A. García-Sastre, J. Neyts, S. Perlman, D. S. Reed, J. A. Richt, C. J. Roy, J. Segalés, S. S. Vasan, A. M. Henao-Restrepo, and D. H. Barouch, “Animal models for COVID-19,” Nature, 2020.
    [Bibtex]
    @Article{MunozFontela:20,
    author = {C{\'{e}}sar Mu{\~{n}}oz-Fontela and William E. Dowling and Simon G. P. Funnell and Pierre-S. Gsell and Ximena Riveros Balta and Randy A. Albrecht and Hanne Andersen and Ralph S. Baric and Miles W. Carroll and Marco Cavaleri and Chuan Qin and Ian Crozier and Kai Dallmeier and Leon de Waal and Emmie de Wit and Leen Delang and Erik Dohm and W. Paul Duprex and Darryl Falzarano and Courtney L. Finch and Matthew B. Frieman and Barney S. Graham and Lisa Gralinski and Kate Guilfoyle and Bart L. Haagmans and Geraldine A. Hamilton and Amy L. Hartman and Sander Herfst and Suzanne J. F. Kaptein and William Klimstra and Ivana Knezevic and Philip R. Krause and Jens H. Kuhn and Roger Le Grand and Mark Lewis and Wen-Chun Liu and Pauline Maisonnasse and Anita K. McElroy and Vincent Munster and Nadia Oreshkova and Angela L. Rasmussen and Joana Rocha-Pereira and Barry Rockx and Estefan{\'{\i}}a Rodr{\'{\i}}guez and Thomas Rogers and Francisco J. Salguero and Michael Schotsaert and Koert J. Stittelaar and Hendrik Jan Thibaut and Chien-Te Tseng and J{\'{u}}lia Vergara-Alert and Martin Beer and Trevor Brasel and Jasper F. W. Chan and Adolfo Garc{\'{\i}}a-Sastre and Johan Neyts and Stanley Perlman and Douglas S. Reed and Juergen A. Richt and Chad J. Roy and Joaquim Segal{\'{e}}s and Seshadri S. Vasan and Ana Mar{\'{\i}}a Henao-Restrepo and Dan H. Barouch},
    title = {Animal models for {COVID}-19},
    journal = {Nature},
    year = {2020},
    doi = {10.1038/s41586-020-2787-6},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] V. Lulla, M. P. Wandel, K. J. Bandyra, T. Dendooven, X. Yang, N. Doyle, S. Oerum, S. O’Rourke, F. Randow, H. J. Maier, W. Scott, Y. Ding, A. E. Firth, K. Bloznelyte, and B. F. Luisi, “Antisense oligonucleotides target a nearly invariant structural element from the SARS-CoV-2 genome and drive RNA degradation,” bioRxiv, 2020.
    [Bibtex]
    @Article{Lulla:20,
    author = {Valeria Lulla and Michal P. Wandel and Katarzyna J. Bandyra and Tom Dendooven and Xiaofei Yang and Nicole Doyle and Stephanie Oerum and Sara O'Rourke and Felix Randow and Helena J. Maier and William Scott and Yiliang Ding and Andrew E. Firth and Kotryna Bloznelyte and Ben F. Luisi},
    title = {Antisense oligonucleotides target a nearly invariant structural element from the {SARS}-{CoV}-2 genome and drive {RNA} degradation},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.09.18.304139},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Ferrarini, A. Lal, R. Rebollo, A. Gruber, A. Guarracino, I. M. Gonzalez, T. Floyd, D. S. de Oliveira, J. Shanklin, E. Beausoleil, T. Pusa, B. Pickett, and V. Aguiar-Pulido, “Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis,” Research Square, 2020.
    [Bibtex]
    @Article{Ferrarini:20a,
    author = {Mariana Ferrarini and Avantika Lal and Rita Rebollo and Andreas Gruber and Andrea Guarracino and Itziar Martinez Gonzalez and Taylor Floyd and Daniel Siqueira de Oliveira and Justin Shanklin and Ethan Beausoleil and Taneli Pusa and Brett Pickett and Vanessa Aguiar-Pulido},
    title = {Genome-wide bioinformatic analyses predict key host and viral factors in {SARS}-{CoV}-2 pathogenesis},
    journal = {{Research Square}},
    year = {2020},
    doi = {10.21203/rs.3.rs-63136/v1},
    publisher = {Research Square},
    }
  • [DOI] A. Ulyte, T. Radtke, I. A. Abela, S. H. Haile, J. Blankenberger, R. Jung, C. Capelli, C. Berger, A. Frei, M. Huber, M. Schanz, M. Schwarzmueller, A. Trkola, J. Fehr, M. A. Puhan, and S. Kriemler, “Variation in SARS-CoV-2 seroprevalence in school-children across districts, schools and classes,” medRix, 2020.
    [Bibtex]
    @Article{Ulyte:20,
    author = {Agne Ulyte and Thomas Radtke and Irene A Abela and Sarah H Haile and Jacob Blankenberger and Ruedi Jung and Celine Capelli and Christoph Berger and Anja Frei and Michael Huber and Merle Schanz and Magdalena Schwarzmueller and Alexandra Trkola and Jan Fehr and Milo A Puhan and Susi Kriemler},
    title = {Variation in {SARS}-{CoV}-2 seroprevalence in school-children across districts, schools and classes},
    journal = {{medRix}},
    year = {2020},
    doi = {10.1101/2020.09.18.20191254},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. W. Pletz, A. Steiner, M. Kesselmeier, B. Loeffler, S. Trommer, S. Weis, J. Maschmann, and A. Stallmach, “Impact of universal masking in health care and community on SARS-CoV-2 spread,” medRxiv, 2020.
    [Bibtex]
    @Article{Pletz:20,
    author = {Mathias W. Pletz and Andrea Steiner and Miriam Kesselmeier and Bettina Loeffler and Sabine Trommer and Sebastian Weis and Jens Maschmann and Andreas Stallmach},
    title = {Impact of universal masking in health care and community on {SARS}-{CoV}-2 spread},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.09.02.20187021},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. J. Hosie, I. Epifano, V. Herder, R. J. Orton, A. Stevenson, N. Johnson, E. MacDonald, D. Dunbar, M. McDonald, F. Howie, B. Tennant, D. Herrity, A. D. S. Filipe, D. G. Streicker, B. J. Willett, P. R. Murcia, R. F. Jarrett, D. L. Robertson, and W. W. and, “Respiratory disease in cats associated with human-to-cat transmission of SARS-CoV-2 in the UK,” bioRxiv, 2020.
    [Bibtex]
    @Article{Hosie:20,
    author = {Margaret J Hosie and Ilaria Epifano and Vanessa Herder and Richard J Orton and Andrew Stevenson and Natasha Johnson and Emma MacDonald and Dawn Dunbar and Michael McDonald and Fiona Howie and Bryn Tennant and Darcy Herrity and Ana Da Silva Filipe and Daniel G Streicker and Brian J Willett and Pablo R Murcia and Ruth F Jarrett and David L Robertson and William Weir and},
    title = {Respiratory disease in cats associated with human-to-cat transmission of {SARS}-{CoV}-2 in the {UK}},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.09.23.309948},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Seifert, S. C. Bera, P. van Nies, R. N. Kirchdoerfer, A. Shannon, T. Le, T. L. Grove, F. S. Papini, J. J. Arnold, S. C. Almo, B. Canard, M. Depken, C. E. Cameron, and D. Dulin, “Signatures and mechanisms of efficacious therapeutic ribonucleotides against SARS-CoV-2 revealed by analysis of its replicase using magnetic tweezers,” bioRxiv, 2020.
    [Bibtex]
    @Article{Seifert:20,
    author = {Mona Seifert and Subhas Chandra Bera and Pauline van Nies and Robert N. Kirchdoerfer and Ashleigh Shannon and Thi-Tuyet-Nhung Le and Tyler L. Grove and Fl{\'{a}}via S. Papini and Jamie J. Arnold and Steven C. Almo and Bruno Canard and Martin Depken and Craig E. Cameron and David Dulin},
    title = {Signatures and mechanisms of efficacious therapeutic ribonucleotides against {SARS}-{CoV}-2 revealed by analysis of its replicase using magnetic tweezers},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.06.240325},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] J. Kreye, M. S. Reincke, H. Kornau, E. Sánchez-Sendin, V. M. Corman, H. Liu, M. Yuan, N. C. Wu, X. Zhu, C. D. Lee, J. Trimpert, M. Höltje, K. Dietert, L. Stöffler, N. von Wardenburg, S. van Hoof, M. A. Homeyer, J. Hoffmann, A. Abdelgawad, A. D. Gruber, L. D. Bertzbach, D. Vladimirova, L. Y. Li, P. C. Barthel, K. Skriner, A. C. Hocke, S. Hippenstiel, M. Witzenrath, N. Suttorp, F. Kurth, C. Franke, M. Endres, D. Schmitz, L. M. Jeworowski, A. Richter, M. L. Schmidt, T. Schwarz, M. A. Müller, C. Drosten, D. Wendisch, L. E. Sander, N. Osterrieder, I. A. Wilson, and H. Prüss, “A SARS-CoV-2 neutralizing antibody protects from lung pathology in a COVID-19 hamster model,” bioRxiv, 2020.
    [Bibtex]
    @Article{Kreye:20,
    author = {Jakob Kreye and S Momsen Reincke and Hans-Christian Kornau and Elisa S{\'{a}}nchez-Sendin and Victor Max Corman and Hejun Liu and Meng Yuan and Nicholas C. Wu and Xueyong Zhu and Chang-Chun D. Lee and Jakob Trimpert and Markus Höltje and Kristina Dietert and Laura Stöffler and Niels von Wardenburg and Scott van Hoof and Marie A Homeyer and Julius Hoffmann and Azza Abdelgawad and Achim D Gruber and Luca D Bertzbach and Daria Vladimirova and Lucie Y Li and Paula Charlotte Barthel and Karl Skriner and Andreas C Hocke and Stefan Hippenstiel and Martin Witzenrath and Norbert Suttorp and Florian Kurth and Christiana Franke and Matthias Endres and Dietmar Schmitz and Lara Maria Jeworowski and Anja Richter and Marie Luisa Schmidt and Tatjana Schwarz and Marcel Alexander Müller and Christian Drosten and Daniel Wendisch and Leif E Sander and Nikolaus Osterrieder and Ian A Wilson and Harald Prüss},
    title = {A {SARS}-{CoV}-2 neutralizing antibody protects from lung pathology in a {COVID}-19 hamster model},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.08.15.252320},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] E. M. Volz, V. Hill, J. T. McCrone, A. Price, D. Jorgensen, A. O. textquotesingle, J. A. Southgate, R. Johnson, B. Jackson, F. F. Nascimento, S. M. Rey, S. M. Nicholls, R. M. Colquhoun, A. S. da Filipe, N. Pacchiarini, M. Bull, L. Geidelberg, I. Siveroni, I. G. Goodfellow, N. J. Loman, O. Pybus, D. L. Robertson, E. C. Thomson, A. Rambaut, and T. C. R. and, “Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity,” medRxiv, 2020.
    [Bibtex]
    @Article{Volz:20,
    author = {Erik M Volz and Verity Hill and John T McCrone and Anna Price and David Jorgensen and Aine O{\textquotesingle}Toole and Joel Alexander Southgate and Robert Johnson and Ben Jackson and Fabricia F. Nascimento and Sara M. Rey and Samuel M. Nicholls and Rachel M. Colquhoun and Ana da Silva Filipe and Nicole Pacchiarini and Matthew Bull and Lily Geidelberg and Igor Siveroni and Ian G. Goodfellow and Nicholas James Loman and Oliver Pybus and David L Robertson and Emma C Thomson and Andrew Rambaut and Thomas R Connor and},
    title = {Evaluating the effects of {SARS}-{CoV}-2 Spike mutation {D614G} on transmissibility and pathogenicity},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.31.20166082},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] J. Braun, L. Loyal, M. Frentsch, D. Wendisch, P. Georg, F. Kurth, S. Hippenstiel, M. Dingeldey, B. Kruse, F. Fauchere, E. Baysal, M. Mangold, L. Henze, R. Lauster, M. A. Mall, K. Beyer, J. Röhmel, S. Voigt, J. Schmitz, S. Miltenyi, I. Demuth, M. A. Müller, A. Hocke, M. Witzenrath, N. Suttorp, F. Kern, U. Reimer, H. Wenschuh, C. Drosten, V. M. Corman, C. Giesecke-Thiel, L. E. Sander, and A. Thiel, “SARS-CoV-2-reactive t cells in healthy donors and patients with COVID-19,” Nature, 2020.
    [Bibtex]
    @Article{Braun:20a,
    author = {Julian Braun and Lucie Loyal and Marco Frentsch and Daniel Wendisch and Philipp Georg and Florian Kurth and Stefan Hippenstiel and Manuela Dingeldey and Beate Kruse and Florent Fauchere and Emre Baysal and Maike Mangold and Larissa Henze and Roland Lauster and Marcus A. Mall and Kirsten Beyer and Jobst Röhmel and Sebastian Voigt and Jürgen Schmitz and Stefan Miltenyi and Ilja Demuth and Marcel A. Müller and Andreas Hocke and Martin Witzenrath and Norbert Suttorp and Florian Kern and Ulf Reimer and Holger Wenschuh and Christian Drosten and Victor M. Corman and Claudia Giesecke-Thiel and Leif Erik Sander and Andreas Thiel},
    title = {{SARS}-{CoV}-2-reactive T cells in healthy donors and patients with {COVID}-19},
    journal = {Nature},
    year = {2020},
    doi = {10.1038/s41586-020-2598-9},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] T. L. Meister, Y. Brüggemann, D. Todt, C. Conzelmann, J. A. Müller, R. Groß, J. Münch, A. Krawczyk, J. Steinmann, J. Steinmann, S. Pfaender, and E. Steinmann, “Virucidal efficacy of different oral rinses against SARS-CoV-2,” J infect dis, 2020.
    [Bibtex]
    @Article{Meister:20,
    author = {Toni Luise Meister and Yannick Brüggemann and Daniel Todt and Carina Conzelmann and Janis A Müller and Rüdiger Gro{\ss} and Jan Münch and Adalbert Krawczyk and Jörg Steinmann and Jochen Steinmann and Stephanie Pfaender and Eike Steinmann},
    title = {Virucidal efficacy of different oral rinses against {SARS}-{CoV}-2},
    journal = {J Infect Dis},
    year = {2020},
    doi = {10.1093/infdis/jiaa471},
    publisher = {Oxford University Press ({OUP})},
    }
  • [DOI] M. F. Boni, P. Lemey, X. Jiang, T. T. Lam, B. W. Perry, T. A. Castoe, A. Rambaut, and D. L. Robertson, “Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic,” Nat Microbiol, 2020.
    [Bibtex]
    @Article{Boni:20,
    author = {Maciej F. Boni and Philippe Lemey and Xiaowei Jiang and Tommy Tsan-Yuk Lam and Blair W. Perry and Todd A. Castoe and Andrew Rambaut and David L. Robertson},
    title = {Evolutionary origins of the {SARS}-{CoV}-2 sarbecovirus lineage responsible for the {COVID}-19 pandemic},
    journal = {{Nat Microbiol}},
    year = {2020},
    doi = {10.1038/s41564-020-0771-4},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] A. Lai, A. Bergna, S. Caucci, N. Clementi, I. Vicenti, F. Dragoni, A. M. Cattelan, S. Menzo, A. Pan, A. Callegaro, A. Tagliabracci, A. Caruso, F. Caccuri, S. Ronchiadin, C. Balotta, M. Zazzi, E. Vaccher, M. Clementi, M. Galli, and G. Zehender, “Molecular tracing of SARS-CoV-2 in italy in the first three months of the epidemic,” Viruses, vol. 12, iss. 8, p. 798, 2020.
    [Bibtex]
    @Article{Lai:20,
    author = {Alessia Lai and Annalisa Bergna and Sara Caucci and Nicola Clementi and Ilaria Vicenti and Filippo Dragoni and Anna Maria Cattelan and Stefano Menzo and Angelo Pan and Annapaola Callegaro and Adriano Tagliabracci and Arnaldo Caruso and Francesca Caccuri and Silvia Ronchiadin and Claudia Balotta and Maurizio Zazzi and Emanuela Vaccher and Massimo Clementi and Massimo Galli and Gianguglielmo Zehender},
    title = {Molecular Tracing of {SARS}-{CoV}-2 in Italy in the First Three Months of the Epidemic},
    journal = {Viruses},
    year = {2020},
    volume = {12},
    number = {8},
    pages = {798},
    doi = {10.3390/v12080798},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] N. S. Zuckerman, R. Pando, E. Bucris, Y. Drori, Y. Lustig, O. Erster, O. Mor, E. Mendelson, and M. Mandelboim, “Comprehensive analyses of SARS-CoV-2 transmission in a public health virology laboratory,” Viruses, vol. 12, iss. 8, p. 854, 2020.
    [Bibtex]
    @Article{Zuckerman:20,
    author = {Neta S. Zuckerman and Rakefet Pando and Efrat Bucris and Yaron Drori and Yaniv Lustig and Oran Erster and Orna Mor and Ella Mendelson and Michal Mandelboim},
    title = {Comprehensive Analyses of {SARS}-{CoV}-2 Transmission in a Public Health Virology Laboratory},
    journal = {Viruses},
    year = {2020},
    volume = {12},
    number = {8},
    pages = {854},
    doi = {10.3390/v12080854},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] N. Clementi, E. Criscuolo, R. A. Diotti, R. Ferrarese, M. Castelli, L. Dagna, R. Burioni, M. Clementi, and N. Mancini, “Combined prophylactic and therapeutic use maximizes hydroxychloroquine anti-SARS-CoV-2 effects in vitro,” Front Microbiol, vol. 11, 2020.
    [Bibtex]
    @Article{Clementi:20,
    author = {Nicola Clementi and Elena Criscuolo and Roberta Antonia Diotti and Roberto Ferrarese and Matteo Castelli and Lorenzo Dagna and Roberto Burioni and Massimo Clementi and Nicasio Mancini},
    title = {Combined Prophylactic and Therapeutic Use Maximizes Hydroxychloroquine Anti-{SARS}-{CoV}-2 Effects in vitro},
    journal = {{Front Microbiol}},
    year = {2020},
    volume = {11},
    doi = {10.3389/fmicb.2020.01704},
    publisher = {Frontiers Media {SA}},
    }
  • [DOI] K. McLaughlin, M. Bechtel, D. Bojkova, C. Münch, S. Ciesek, M. N. Wass, M. Michaelis, and J. Cinatl, “COVID-19-related coagulopathy—is transferrin a missing link?,” Diagnostics, vol. 10, iss. 8, p. 539, 2020.
    [Bibtex]
    @Article{McLaughlin:20,
    author = {Katie-May McLaughlin and Marco Bechtel and Denisa Bojkova and Christian Münch and Sandra Ciesek and Mark N. Wass and Martin Michaelis and Jindrich Cinatl},
    title = {{COVID}-19-Related Coagulopathy{\textemdash}Is Transferrin a Missing Link?},
    journal = {Diagnostics},
    year = {2020},
    volume = {10},
    number = {8},
    pages = {539},
    doi = {10.3390/diagnostics10080539},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] C. Valle, B. Martin, F. Touret, A. Shannon, B. Canard, J. Guillemot, B. Coutard, and E. Decroly, “Drugs against SARS-CoV -2: what do we know about their mode of action?,” Rev Med Virol, 2020.
    [Bibtex]
    @Article{Valle:20,
    author = {Coralie Valle and Baptiste Martin and Franck Touret and Ashleigh Shannon and Bruno Canard and Jean-Claude Guillemot and Bruno Coutard and Etienne Decroly},
    title = {Drugs against {SARS}-{CoV} -2: What do we know about their mode of action?},
    journal = {{Rev Med Virol}},
    year = {2020},
    doi = {10.1002/rmv.2143},
    publisher = {Wiley},
    }
  • [DOI] D. A. Hofmänner, P. W. D. Garcia, B. Duvnjak, B. Chakrakodi, J. D. Maier, M. Huber, J. Huder, A. Wolfensberger, P. W. Schreiber, R. A. Schüpbach, A. S. Zinkernagel, P. K. Bühler, and S. D. Brugger, “Bacterial but no SARS-CoV-2 contamination after terminal disinfection of tertiary care intensive care units treating COVID-19 patients,” Research Square, 2020.
    [Bibtex]
    @Article{Hofmänner:20,
    author = {Daniel A Hofmänner and Pedro D Wendel Garcia and Branko Duvnjak and Bhavya Chakrakodi and Julian D Maier and Michael Huber and Jon Huder and Aline Wolfensberger and Peter W Schreiber and Reto A. Schüpbach and Annelies S Zinkernagel and Philipp K Bühler and Silvio D Brugger},
    title = {Bacterial but no {SARS}-{CoV}-2 contamination after terminal disinfection of tertiary care intensive care units treating {COVID}-19 patients},
    journal = {{Research Square}},
    year = {2020},
    doi = {10.21203/rs.3.rs-47872/v1},
    publisher = {Research Square},
    }
  • [DOI] M. G. Ferrarini, A. Lal, R. Rebollo, A. Gruber, A. Guarracino, I. M. Gonzalez, T. Floyd, D. S. de Oliveira, J. Shanklin, E. Beausoleil, T. Pusa, B. E. Pickett, and V. Aguiar-Pulido, “Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis,” bioRxiv, 2020.
    [Bibtex]
    @Article{Ferrarini:20,
    author = {Mariana G. Ferrarini and Avantika Lal and Rita Rebollo and Andreas Gruber and Andrea Guarracino and Itziar Martinez Gonzalez and Taylor Floyd and Daniel Siqueira de Oliveira and Justin Shanklin and Ethan Beausoleil and Taneli Pusa and Brett E. Pickett and Vanessa Aguiar-Pulido},
    title = {Genome-wide bioinformatic analyses predict key host and viral factors in {SARS}-{CoV}-2 pathogenesis},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.28.225581},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. M. Folegatti, K. J. Ewer, P. K. Aley, B. Angus, S. Becker, S. Belij-Rammerstorfer, D. Bellamy, S. Bibi, M. Bittaye, E. A. Clutterbuck, C. Dold, S. N. Faust, A. Finn, A. L. Flaxman, B. Hallis, P. Heath, D. Jenkin, R. Lazarus, R. Makinson, A. M. Minassian, K. M. Pollock, M. Ramasamy, H. Robinson, M. Snape, R. Tarrant, M. Voysey, C. Green, A. D. Douglas, A. V. S. Hill, T. Lambe, S. C. Gilbert, A. J. Pollard, J. Aboagye, K. Adams, A. Ali, E. Allen, J. L. Allison, R. Anslow, E. H. Arbe-Barnes, G. Babbage, K. Baillie, M. Baker, P. Baker, I. Baleanu, J. Ballaminut, E. Barnes, J. Barrett, L. Bates, A. Batten, K. Beadon, R. Beckley, E. Berrie, L. Berry, A. Beveridge, K. R. Bewley, E. M. Bijker, T. Bingham, L. Blackwell, C. L. Blundell, E. Bolam, E. Boland, N. Borthwick, T. Bower, A. Boyd, T. Brenner, P. D. Bright, C. B. textquotesingle, E. Brunt, J. Burbage, S. Burge, K. R. Buttigieg, N. Byard, I. C. Puig, A. Calvert, S. Camara, M. Cao, F. Cappuccini, M. Carr, M. W. Carroll, V. Carter, K. Cathie, R. J. Challis, I. Chelysheva, J. Cho, P. Cicconi, L. Cifuentes, H. Clark, E. Clark, T. Cole, R. Colin-Jones, C. P. Conlon, A. Cook, N. S. Coombes, R. Cooper, C. A. Cosgrove, K. Coy, W. E. M. Crocker, C. J. Cunningham, B. E. Damratoski, L. Dando, M. S. Datoo, H. Davies, H. D. Graaf, T. Demissie, C. D. Maso, I. Dietrich, T. Dong, F. R. Donnellan, N. Douglas, C. Downing, J. Drake, R. Drake-Brockman, R. E. Drury, S. J. Dunachie, N. J. Edwards, F. D. L. Edwards, C. J. Edwards, S. C. Elias, M. J. Elmore, K. R. W. Emary, M. R. English, S. Fagerbrink, S. Felle, S. Feng, S. Field, C. Fixmer, C. Fletcher, K. J. Ford, J. Fowler, P. Fox, E. Francis, J. Frater, J. Furze, M. Fuskova, E. Galiza, D. Gbesemete, C. Gilbride, G. Gorini, L. Goulston, C. Grabau, L. Gracie, Z. Gray, L. B. Guthrie, M. Hackett, S. Halwe, E. Hamilton, J. Hamlyn, B. Hanumunthadu, I. Harding, S. A. Harris, A. Harris, D. Harrison, C. Harrison, T. C. Hart, L. Haskell, S. Hawkins, I. Head, J. A. Henry, J. Hill, S. H. C. Hodgson, M. M. Hou, E. Howe, N. Howell, C. Hutlin, S. Ikram, C. Isitt, P. Iveson, S. Jackson, F. Jackson, S. W. James, M. Jenkins, E. Jones, K. Jones, C. E. Jones, B. Jones, R. Kailath, K. Karampatsas, J. Keen, S. Kelly, D. Kelly, D. Kerr, S. Kerridge, L. Khan, U. Khan, A. Killen, J. Kinch, T. B. King, L. King, J. King, L. Kingham-Page, P. Klenerman, F. Knapper, J. C. Knight, S. Koleva, A. Kupke, C. W. Larkworthy, J. P. J. Larwood, A. Laskey, A. M. Lawrie, A. Lee, K. Y. N. Lee, E. A. Lee, H. Legge, A. Lelliott, N. Lemm, A. M. Lias, A. Linder, S. Lipworth, X. Liu, S. Liu, R. L. Ramon, M. Lwin, F. Mabesa, M. Madhavan, G. Mallett, K. Mansatta, I. e}, S. Marinou, E. Marlow, J. L. Marshall, J. Martin, J. McEwan, G. Meddaugh, A. J. Mentzer, N. Mirtorabi, M. Moore, E. Moran, E. Morey, V. Morgan, S. J. Morris, H. Morrison, G. Morshead, R. Morter, Y. F. Mujadidi, J. Muller, T. Munera-Huertas, C. Munro, A. Munro, S. Murphy, V. J. Muster, P. Mweu, A. Noé, F. L. Nugent, E. Nugent, K. O. textquotesingle, D. O. textquotesingle, B. Oguti, J. L. Oliver, C. Oliveira, P. J. O. textquotesingle, M. Osborn, P. Osborne, C. Owen, D. Owens, N. Owino, M. Pacurar, K. Parker, H. Parracho, M. Patrick-Smith, V. Payne, J. Pearce, Y. Peng, M. P. P. Alvarez, J. Perring, K. Pfafferott, D. Pipini, E. Plested, H. Pluess-Hall, K. Pollock, I. Poulton, L. Presland, S. Provstgaard-Morys, D. Pulido, K. Radia, F. R. Lopez, J. Rand, H. Ratcliffe, T. Rawlinson, S. Rhead, A. Riddell, A. J. Ritchie, H. Roberts, J. Robson, S. Roche, C. Rohde, C. S. Rollier, R. Romani, I. Rudiansyah, S. Saich, S. Sajjad, S. Salvador, L. S. Riera, H. Sanders, K. Sanders, S. Sapaun, C. Sayce, E. Schofield, G. Screaton, B. Selby, C. Semple, H. R. Sharpe, A. Shea, H. Shelton, S. Silk, L. Silva-Reyes, D. T. Skelly, H. Smee, C. C. Smith, D. J. Smith, R. Song, A. J. Spencer, E. Stafford, A. Steele, E. Stefanova, L. Stockdale, A. Szigeti, A. Tahiri-Alaoui, M. Tait, H. Talbot, R. Tanner, I. J. Taylor, V. Taylor, R. T. W. Naude, N. Thakur, Y. Themistocleous, A. Themistocleous, M. Thomas, T. M. Thomas, A. Thompson, S. Thomson-Hill, J. Tomlins, S. Tonks, J. Towner, N. Tran, J. A. Tree, A. Truby, K. Turkentine, C. Turner, N. Turner, S. Turner, T. Tuthill, M. Ulaszewska, R. Varughese, N. V. Doremalen, K. Veighey, M. K. Verheul, I. Vichos, E. Vitale, L. Walker, M. E. E. Watson, B. Welham, J. Wheat, C. White, R. White, A. T. Worth, D. Wright, S. Wright, X. L. Yao, and Y. Yau, “Safety and immunogenicity of the ChAdOx1 nCoV-19 vaccine against SARS-CoV-2: a preliminary report of a phase 1/2, single-blind, randomised controlled trial,” Lancet, 2020.
    [Bibtex]
    @Article{Folegatti:20a,
    author = {Pedro M Folegatti and Katie J Ewer and Parvinder K Aley and Brian Angus and Stephan Becker and Sandra Belij-Rammerstorfer and Duncan Bellamy and Sagida Bibi and Mustapha Bittaye and Elizabeth A Clutterbuck and Christina Dold and Saul N Faust and Adam Finn and Amy L Flaxman and Bassam Hallis and Paul Heath and Daniel Jenkin and Rajeka Lazarus and Rebecca Makinson and Angela M Minassian and Katrina M Pollock and Maheshi Ramasamy and Hannah Robinson and Matthew Snape and Richard Tarrant and Merryn Voysey and Catherine Green and Alexander D Douglas and Adrian V S Hill and Teresa Lambe and Sarah C Gilbert and Andrew J Pollard and Jeremy Aboagye and Kelly Adams and Aabidah Ali and Elizabeth Allen and Jennifer L. Allison and Rachel Anslow and Edward H. Arbe-Barnes and Gavin Babbage and Kenneth Baillie and Megan Baker and Philip Baker and Ioana Baleanu and Juliana Ballaminut and Eleanor Barnes and Jordan Barrett and Louise Bates and Alexander Batten and Kirsten Beadon and Rebecca Beckley and Eleanor Berrie and Lisa Berry and Amy Beveridge and Kevin R. Bewley and Else Margreet Bijker and Tracey Bingham and Luke Blackwell and Caitlin L. Blundell and Emma Bolam and Elena Boland and Nicola Borthwick and Thomas Bower and Amy Boyd and Tanja Brenner and Philip D. Bright and Charlie Brown-O{\textquotesingle}Sullivan and Emily Brunt and Jamie Burbage and Sharon Burge and Karen R. Buttigieg and Nicholas Byard and Ingrid Cabera Puig and Anna Calvert and Susana Camara and Michelangelo Cao and Federica Cappuccini and Melanie Carr and Miles W. Carroll and Victoria Carter and Katrina Cathie and Ruth J. Challis and Irina Chelysheva and Jee-Sun Cho and Paola Cicconi and Liliana Cifuentes and Helen Clark and Elizabeth Clark and Tom Cole and Rachel Colin-Jones and Christopher P. Conlon and Aislinn Cook and Naomi S. Coombes and Rachel Cooper and Catherine A. Cosgrove and Karen Coy and Wendy E.M. Crocker and Christina J. Cunningham and Brad E. Damratoski and Lynne Dando and Mehreen S. Datoo and Hannah Davies and Hans De Graaf and Tesfaye Demissie and Claudio Di Maso and Isabelle Dietrich and Tao Dong and Francesca R. Donnellan and Naomi Douglas and Charlotte Downing and Jonathan Drake and Rachael Drake-Brockman and Ruth Elizabeth Drury and Susanna Jane Dunachie and Nick J. Edwards and Frances D.L. Edwards and Chris J. Edwards and Sean C. Elias and Michael J. Elmore and Katherine R.W. Emary and Marcus Rex English and Susanne Fagerbrink and Sally Felle and Shuo Feng and Samantha Field and Carine Fixmer and Clare Fletcher and Karen J. Ford and Jamie Fowler and Polly Fox and Emma Francis and John Frater and Julie Furze and Michelle Fuskova and Eva Galiza and Diane Gbesemete and Ciaran Gilbride and Giacomo Gorini and Lyndsey Goulston and Caroline Grabau and Lara Gracie and Zoe Gray and Lucy Belle Guthrie and Mark Hackett and Sandro Halwe and Elizabeth Hamilton and Joseph Hamlyn and Brama Hanumunthadu and Irasha Harding and Stephanie A. Harris and Andrew Harris and Daisy Harrison and Clare Harrison and Thomas C. Hart and Louise Haskell and Sophia Hawkins and Ian Head and John Aaron Henry and Jennifer Hill and Susanne H.C. Hodgson and Mimi M. Hou and Elizabeth Howe and Nicola Howell and Cecilia Hutlin and Sabina Ikram and Catherine Isitt and Poppy Iveson and Susan Jackson and Frederic Jackson and Sir William James and Megan Jenkins and Elizabeth Jones and Kathryn Jones and Christine E. Jones and Bryony Jones and Reshma Kailath and Konstantinos Karampatsas and Jade Keen and Sarah Kelly and Dearbhla Kelly and David Kerr and Simon Kerridge and Liaquat Khan and Uzma Khan and Annabel Killen and Jasmin Kinch and Thomas B. King and Lloyd King and Jade King and Lucy Kingham-Page and Paul Klenerman and Francesca Knapper and Julian C. Knight and Stanislava Koleva and Alexandra Kupke and Colin W. Larkworthy and Jessica P.J. Larwood and Anna Laskey and Alison M. Lawrie and Arlene Lee and Kim Yee Ngan Lee and Emily A. Lee and Helen Legge and Alice Lelliott and Nana-Marie Lemm and Amelia M. Lias and Aline Linder and Samuel Lipworth and Xinxue Liu and Shuchang Liu and Raquel Lopez Ramon and May Lwin and Francesca Mabesa and Meera Madhavan and Gary Mallett and Kushal Mansatta and In{\={e}}s Marcal and Spyridoula Marinou and Emma Marlow and Julia L. Marshall and Jane Martin and Joanne McEwan and Gretchen Meddaugh and Alexander J. Mentzer and Neginsadat Mirtorabi and Maria Moore and Edward Moran and Ella Morey and Victoria Morgan and Susan Jane Morris and Hazel Morrison and Gertraud Morshead and Richard Morter and Yama F. Mujadidi and Jilly Muller and Tatiana Munera-Huertas and Claire Munro and Alasdair Munro and Sarah Murphy and Vincent J. Muster and Philomena Mweu and Andr{\'{e}}s No{\'{e}} and Fay L. Nugent and Elizabeth Nugent and Katie O{\textquotesingle}Brien and Daniel O{\textquotesingle}Connor and Blanch{\'{e}} Oguti and Jennifer L. Oliver and Catarina Oliveira and Peter John O{\textquotesingle}Reilly and Mairead Osborn and Piper Osborne and Cathy Owen and Daniel Owens and Nelly Owino and Mihaela Pacurar and Kaye Parker and Helena Parracho and Maia Patrick-Smith and Victoria Payne and Jennifer Pearce and Yanchun Peng and Marco Polo Peralta Alvarez and James Perring and Katja Pfafferott and Dimitra Pipini and Emma Plested and Helen Pluess-Hall and Katrina Pollock and Ian Poulton and Laura Presland and Samuel Provstgaard-Morys and David Pulido and Kajal Radia and Fernando Ramos Lopez and Jade Rand and Helen Ratcliffe and Thomas Rawlinson and Sarah Rhead and Amy Riddell and Adam John Ritchie and Hannah Roberts and Joanna Robson and Sophie Roche and Cornelius Rohde and Christine S. Rollier and Rosanna Romani and Indra Rudiansyah and Stephen Saich and Sara Sajjad and Stephannie Salvador and Lidia Sanchez Riera and Helen Sanders and Katherine Sanders and Shari Sapaun and Chloe Sayce and Ella Schofield and Gavin Screaton and Beatrice Selby and Calum Semple and Hannah R. Sharpe and Adam Shea and Holly Shelton and Sarah Silk and Laura Silva-Reyes and Donal T. Skelly and Heather Smee and Catherine C. Smith and David J. Smith and Rinn Song and Alexandra J. Spencer and Elizabeth Stafford and Amy Steele and Elena Stefanova and Lisa Stockdale and Anna Szigeti and Abdessamad Tahiri-Alaoui and Moira Tait and Helen Talbot and Rachel Tanner and Iona Jennifer Taylor and Victoria Taylor and Rebecca Te Water Naude and Nazia Thakur and Yrene Themistocleous and Andreas Themistocleous and Merin Thomas and Tonia M. Thomas and Amber Thompson and Samantha Thomson-Hill and Jennifer Tomlins and Susan Tonks and James Towner and Nguyen Tran and Julia A. Tree and Adam Truby and Kate Turkentine and Cheryl Turner and Nicola Turner and Sally Turner and Toby Tuthill and Marta Ulaszewska and Rachel Varughese and Neeltje Van Doremalen and Kristin Veighey and Marije K. Verheul and Iason Vichos and Elia Vitale and Laura Walker and Marion E.E. Watson and Benjamin Welham and Julie Wheat and Caroline White and Rachel White and Andrew T. Worth and Danny Wright and Suzie Wright and Xin Li Yao and Yasmine Yau},
    title = {Safety and immunogenicity of the {ChAdOx}1 {nCoV}-19 vaccine against {SARS}-{CoV}-2: a preliminary report of a phase 1/2, single-blind, randomised controlled trial},
    journal = {Lancet},
    year = {2020},
    doi = {10.1016/s0140-6736(20)31604-4},
    publisher = {Elsevier {BV}},
    }
  • [DOI] N. Osterrieder, L. D. Bertzbach, K. Dietert, A. Abdelgawad, D. Vladimirova, D. Kunec, D. Hoffmann, M. Beer, A. D. Gruber, and J. Trimpert, “Age-dependent progression of SARS-CoV-2 infection in syrian hamsters,” Viruses, vol. 12, iss. 7, p. 779, 2020.
    [Bibtex]
    @Article{Osterrieder:20,
    author = {Nikolaus Osterrieder and Luca D. Bertzbach and Kristina Dietert and Azza Abdelgawad and Daria Vladimirova and Dusan Kunec and Donata Hoffmann and Martin Beer and Achim D. Gruber and Jakob Trimpert},
    title = {Age-Dependent Progression of {SARS}-{CoV}-2 Infection in Syrian Hamsters},
    journal = {Viruses},
    year = {2020},
    volume = {12},
    number = {7},
    pages = {779},
    doi = {10.3390/v12070779},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] M. Hoffmann, K. Mösbauer, H. Hofmann-Winkler, A. Kaul, H. Kleine-Weber, N. Krüger, N. C. Gassen, M. A. Müller, C. Drosten, and S. Pöhlmann, “Chloroquine does not inhibit infection of human lung cells with SARS-CoV-2,” Nature, 2020.
    [Bibtex]
    @Article{Hoffmann:20d,
    author = {Markus Hoffmann and Kirstin Mösbauer and Heike Hofmann-Winkler and Artur Kaul and Hannah Kleine-Weber and Nadine Krüger and Nils C. Gassen and Marcel A. Müller and Christian Drosten and Stefan Pöhlmann},
    title = {Chloroquine does not inhibit infection of human lung cells with {SARS}-{CoV}-2},
    journal = {Nature},
    year = {2020},
    doi = {10.1038/s41586-020-2575-3},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] S. Weis, A. Scherag, M. Baier, M. Kiehntopf, T. Kamradt, S. Kolanos, J. Ankert, S. Gloeckner, O. Makarewicz, S. Hagel, C. Bahrs, A. Kimmig, H. Proquitte, J. Guerra, B. Loeffler, and M. W. Pletz, “Seroprevalence of SARS-CoV-2 antibodies in an entirely PCR-sampled and quarantined community after a COVID-19 outbreak – the CoNAN study,” medRxiv, 2020.
    [Bibtex]
    @Article{Weis:20,
    author = {Sebastian Weis and Andre Scherag and Michael Baier and Michael Kiehntopf and Thomas Kamradt and Steffi Kolanos and Juliane Ankert and Stefan Gloeckner and Oliwia Makarewicz and Stefan Hagel and Christina Bahrs and Aurelia Kimmig and Hans Proquitte and Joel Guerra and Bettina Loeffler and Mathias W. Pletz},
    title = {Seroprevalence of {SARS}-{CoV}-2 antibodies in an entirely {PCR}-sampled and quarantined community after a {COVID}-19 outbreak - the {CoNAN} study},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.15.20154112},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] D. Bonn, S. H. Smith, A. Somsen, C. van Rijn, S. Kooij, L. van der Hoek, and R. A. Bem, “Probability of aerosol transmission of SARS-CoV-2,” medRxiv, 2020.
    [Bibtex]
    @Article{Bonn:20,
    author = {Daniel Bonn and Scott Howard Smith and Aernout Somsen and Cees van Rijn and Stefan Kooij and Lia van der Hoek and Reinout A Bem},
    title = {Probability of aerosol transmission of {SARS}-{CoV}-2},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.16.20155572},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] O. Ziv, J. Price, L. Shalamova, T. Kamenova, I. Goodfellow, F. Weber, and E. A. Miska, “The short- and long-range RNA-RNA interactome of SARS-CoV-2,” bioRxiv, 2020.
    [Bibtex]
    @Article{Ziv:20,
    author = {Omer Ziv and Jonathan Price and Lyudmila Shalamova and Tsveta Kamenova and Ian Goodfellow and Friedemann Weber and Eric A. Miska},
    title = {The short- and long-range {RNA}-{RNA} Interactome of {SARS}-{CoV}-2},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.19.211110},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] F. Zettl, T. L. Meister, T. Vollmer, B. Fischer, J. Steinmann, A. Krawczyk, P. V’kovski, D. Todt, E. Steinmann, S. Pfaender, and G. Zimmer, “Rapid quantification of SARS-CoV-2-neutralizing antibodies using propagation-defective vesicular stomatitis virus pseudotypes,” Vaccines, vol. 8, iss. 3, p. 386, 2020.
    [Bibtex]
    @Article{Zettl:20,
    author = {Ferdinand Zettl and Toni Luise Meister and Tanja Vollmer and Bastian Fischer and Jörg Steinmann and Adalbert Krawczyk and Philip V'kovski and Daniel Todt and Eike Steinmann and Stephanie Pfaender and Gert Zimmer},
    title = {Rapid Quantification of {SARS}-{CoV}-2-Neutralizing Antibodies Using Propagation-Defective Vesicular Stomatitis Virus Pseudotypes},
    journal = {Vaccines},
    year = {2020},
    volume = {8},
    number = {3},
    pages = {386},
    doi = {10.3390/vaccines8030386},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] C. Kreer, M. Zehner, T. Weber, M. S. Ercanoglu, L. Gieselmann, C. Rohde, S. Halwe, M. Korenkov, P. Schommers, K. Vanshylla, V. D. Cristanziano, H. Janicki, R. Brinker, A. Ashurov, V. Krähling, A. Kupke, H. Cohen-Dvashi, M. Koch, J. M. Eckert, S. Lederer, N. Pfeifer, T. Wolf, M. J. G. T. Vehreschild, C. Wendtner, R. Diskin, H. Gruell, S. Becker, and F. Klein, “Longitudinal isolation of potent near-germline SARS-CoV-2-neutralizing antibodies from COVID-19 patients,” Cell, 2020.
    [Bibtex]
    @Article{Kreer:20a,
    author = {Christoph Kreer and Matthias Zehner and Timm Weber and Meryem S. Ercanoglu and Lutz Gieselmann and Cornelius Rohde and Sandro Halwe and Michael Korenkov and Philipp Schommers and Kanika Vanshylla and Veronica Di Cristanziano and Hanna Janicki and Reinhild Brinker and Artem Ashurov and Verena Krähling and Alexandra Kupke and Hadas Cohen-Dvashi and Manuel Koch and Jan Mathis Eckert and Simone Lederer and Nico Pfeifer and Timo Wolf and Maria J.G.T. Vehreschild and Clemens Wendtner and Ron Diskin and Henning Gruell and Stephan Becker and Florian Klein},
    title = {Longitudinal Isolation of Potent Near-Germline {SARS}-{CoV}-2-Neutralizing Antibodies from {COVID}-19 Patients},
    journal = {Cell},
    year = {2020},
    doi = {10.1016/j.cell.2020.06.044},
    publisher = {Elsevier {BV}},
    }
  • [DOI] V. Matheeussen, V. M. Corman, O. D. Mantke, E. McCulloch, C. Lammens, H. Goossens, D. Niemeyer, P. S. Wallace, P. Klapper, H. G. Niesters, C. Drosten, and M. I. and, “International external quality assessment for SARS-CoV-2 molecular detection and survey on clinical laboratory preparedness during the COVID-19 pandemic, April/May 2020,” Euro Surveill, vol. 25, iss. 27, 2020.
    [Bibtex]
    @Article{Matheeussen:20,
    author = {Veerle Matheeussen and Victor M Corman and Oliver Donoso Mantke and Elaine McCulloch and Christine Lammens and Herman Goossens and Daniela Niemeyer and Paul S Wallace and Paul Klapper and Hubert GM Niesters and Christian Drosten and Margareta Ieven and},
    title = {International external quality assessment for {SARS}-{CoV}-2 molecular detection and survey on clinical laboratory preparedness during the {COVID}-19 pandemic, {A}pril/{M}ay 2020},
    journal = {{Euro Surveill}},
    year = {2020},
    volume = {25},
    number = {27},
    doi = {10.2807/1560-7917.es.2020.25.27.2001223},
    publisher = {European Centre for Disease Control and Prevention ({ECDC})},
    }
  • [DOI] A. E. Firth, “A putative new SARS-CoV protein, 3c, encoded in an ORF overlapping ORF3a,” J Gen Virol, 2020.
    [Bibtex]
    @Article{Firth:20,
    author = {Andrew E. Firth},
    title = {A putative new {SARS}-{CoV} protein, 3c, encoded in an {ORF} overlapping {ORF}3a},
    journal = {{J Gen Virol}},
    year = {2020},
    doi = {10.1099/jgv.0.001469},
    publisher = {Microbiology Society},
    }
  • [DOI] D. D. Pollock, T. A. Castoe, B. W. Perry, S. Lytras, K. J. Wade, D. L. Robertson, E. C. Holmes, M. F. Boni, S. K. L. Pond, R. Parry, E. J. Carlton, J. L. N. Wood, P. S. Pennings, and R. A. Goldstein, “Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2,” Mol Biol Evol, 2020.
    [Bibtex]
    @Article{Pollock:20,
    author = {David D Pollock and Todd A Castoe and Blair W Perry and Spyros Lytras and Kristen J Wade and David L Robertson and Edward C Holmes and Maciej F Boni and Sergei L Kosakovsky Pond and Rhys Parry and Elizabeth J Carlton and James L N Wood and Pleuni S Pennings and Richard A Goldstein},
    title = {Viral {CpG} deficiency provides no evidence that dogs were intermediate hosts for {SARS}-{CoV}-2},
    journal = {{Mol Biol Evol}},
    year = {2020},
    doi = {10.1093/molbev/msaa178},
    editor = {Thomas Leitner},
    publisher = {Oxford University Press ({OUP})},
    }
  • [DOI] C. Wylezich, S. Calvelage, K. Schlottau, U. Ziegler, A. Pohlmann, D. Höper, and M. Beer, “Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2,” bioRxiv, 2020.
    [Bibtex]
    @Article{Wylezich:20,
    author = {Claudia Wylezich and Sten Calvelage and Kore Schlottau and Ute Ziegler and Anne Pohlmann and Dirk Höper and Martin Beer},
    title = {Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including {SARS}-{CoV}-2},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.30.181446},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] S. Deinhardt-Emmer, D. Wittschieber, J. Sanft, S. Kleemann, S. Elschner, K. F. Haupt, V. Vau, C. Häring, J. Rödel, A. Henke, C. Ehrhardt, M. Bauer, M. Philipp, N. Gaßler, S. Nietzsche, B. Löffler, and G. Mall, “Early postmortem mapping of SARS-CoV-2 RNA in patients with COVID-19 and correlation to tissue damage,” bioRxiv, 2020.
    [Bibtex]
    @Article{Deinhardt-Emmer:20,
    author = {Stefanie Deinhardt-Emmer and Daniel Wittschieber and Juliane Sanft and Sandra Kleemann and Stefan Elschner and Karoline F. Haupt and Vanessa Vau and Clio Häring and Jürgen Rödel and Andreas Henke and Christina Ehrhardt and Michael Bauer and Mike Philipp and Nikolaus Ga{\ss}ler and Sandor Nietzsche and Bettina Löffler and Gita Mall},
    title = {Early postmortem mapping of {SARS}-{CoV}-2 {RNA} in patients with {COVID}-19 and correlation to tissue damage},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.01.182550},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. Vetter, C. Eberhardt, B. Meyer, P. Martinez, G. Torriani, F. Pigny, S. Lemeille, S. Cordey, F. Laubscher, D. Vu, A. Calame, M. Schibler, F. Jacquerioz, G. Blanchard, C. Siegrist, L. Kaiser, A. Didierlaurent, and isabella eckerle, “Daily viral kinetics and innate and adaptive immune responses assessment in COVID-19: a case series,” medRxiv, 2020.
    [Bibtex]
    @Article{Vetter:20,
    author = {Pauline Vetter and Christiane Eberhardt and Benjamin Meyer and Paola Martinez and Giulia Torriani and Fiona Pigny and Sylvain Lemeille and Samuel Cordey and Florian Laubscher and Diem-Lan Vu and Adrien Calame and Manuel Schibler and Frederique Jacquerioz and Geraldine Blanchard and Claire-Anne Siegrist and Laurent Kaiser and Arnaud Didierlaurent and isabella eckerle},
    title = {Daily viral kinetics and innate and adaptive immune responses assessment in {COVID}-19: a case series},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.07.02.20143271},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Panning, J. and Wiener, K. Rothe, J. Schneider, M. W. Pletz, G. Rohde, J. Rupp, M. Witzenrath, and C. D. Spinner, “No SARS-CoV-2 detection in the german CAPNETZ cohort of community acquired pneumonia before COVID-19 peak in March 2020,” Infection, 2020.
    [Bibtex]
    @Article{Panning:20,
    author = {Marcus Panning and and Julius Wiener and Kathrin Rothe and Jochen Schneider and Mathias W. Pletz and Gernot Rohde and Jan Rupp and Martin Witzenrath and Christoph D. Spinner},
    title = {No {SARS}-{CoV}-2 detection in the German {CAPNETZ} cohort of community acquired pneumonia before {COVID}-19 peak in {M}arch 2020},
    journal = {Infection},
    year = {2020},
    doi = {10.1007/s15010-020-01471-y},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] C. B. Messner, V. Demichev, D. Wendisch, L. Michalick, M. White, A. Freiwald, K. Textoris-Taube, S. I. Vernardis, A. Egger, M. Kreidl, D. Ludwig, C. Kilian, F. Agostini, A. Zelezniak, C. Thibeault, M. Pfeiffer, S. Hippenstiel, A. Hocke, C. von Kalle, A. Campbell, C. Hayward, D. J. Porteous, R. E. Marioni, C. Langenberg, K. S. Lilley, W. M. Kuebler, M. Mülleder, C. Drosten, N. Suttorp, M. Witzenrath, F. Kurth, L. E. Sander, and M. Ralser, “Ultra-high-throughput clinical proteomics reveals classifiers of COVID-19 infection,” Cell Syst, 2020.
    [Bibtex]
    @Article{Messner:20,
    author = {Christoph B. Messner and Vadim Demichev and Daniel Wendisch and Laura Michalick and Matthew White and Anja Freiwald and Kathrin Textoris-Taube and Spyros I. Vernardis and Anna-Sophia Egger and Marco Kreidl and Daniela Ludwig and Christiane Kilian and Federica Agostini and Aleksej Zelezniak and Charlotte Thibeault and Moritz Pfeiffer and Stefan Hippenstiel and Andreas Hocke and Christof von Kalle and Archie Campbell and Caroline Hayward and David J. Porteous and Riccardo E. Marioni and Claudia Langenberg and Kathryn S. Lilley and Wolfgang M. Kuebler and Michael Mülleder and Christian Drosten and Norbert Suttorp and Martin Witzenrath and Florian Kurth and Leif Erik Sander and Markus Ralser},
    title = {Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of {COVID}-19 Infection},
    journal = {{Cell Syst}},
    year = {2020},
    doi = {10.1016/j.cels.2020.05.012},
    publisher = {Elsevier {BV}},
    }
  • [DOI] D. L. Bugembe, J. Kayiwa, M. V. T. Phan, P. Tushabe, S. Balinandi, B. Dhaala, J. Lexow, H. Mwebesa, J. Aceng, H. Kyobe, D. Ssemwanga, J. Lutwama, P. Kaleebu, and M. Cotten, “Main routes of entry and genomic diversity of SARS-CoV-2, Uganda,” Emerg Infect Dis, vol. 26, iss. 10, 2020.
    [Bibtex]
    @Article{Bugembe:20,
    author = {Daniel Lule Bugembe and John Kayiwa and My V.T. Phan and Phiona Tushabe and Stephen Balinandi and Beatrice Dhaala and Jonas Lexow and Henry Mwebesa and Jane Aceng and Henry Kyobe and Deogratius Ssemwanga and Julius Lutwama and Pontiano Kaleebu and Matthew Cotten},
    title = {Main Routes of Entry and Genomic Diversity of {SARS}-{CoV}-2, {U}ganda},
    journal = {{Emerg Infect Dis}},
    year = {2020},
    volume = {26},
    number = {10},
    doi = {10.3201/eid2610.202575},
    publisher = {Centers for Disease Control and Prevention ({CDC})},
    }
  • [DOI] M. Beer, M. Doherr, K. Osterrieder, D. Pfeiffer, and J. Trimpert, “SARS-CoV-2 vaccination—a plea for fast and coordinated action,” Zoonoses Public Health, 2020.
    [Bibtex]
    @Article{Beer:20,
    author = {Martin Beer and Marcus Doherr and Klaus Osterrieder and Dirk Pfeiffer and Jakob Trimpert},
    title = {{SARS}-{CoV}-2 vaccination{\textemdash}A plea for fast and coordinated action},
    journal = {{Zoonoses Public Health}},
    year = {2020},
    doi = {10.1111/zph.12740},
    publisher = {Wiley},
    }
  • [DOI] N. Clementi, R. Ferrarese, M. Tonelli, V. Amato, S. Racca, M. Locatelli, G. Lippi, G. Silvestri, M. Clementi, and N. Mancini, “Lower nasopharyngeal viral load during the latest phase of COVID-19 pandemic in a Northern Italy University Hospital,” Clin Chem Lab Med, 2020.
    [Bibtex]
    @Article{Clementi:20b,
    author = {Nicola Clementi and Roberto Ferrarese and Marco Tonelli and Virginia Amato and Sara Racca and Massimo Locatelli and Giuseppe Lippi and Guido Silvestri and Massimo Clementi and Nicasio Mancini},
    title = {Lower nasopharyngeal viral load during the latest phase of {COVID}-19 pandemic in a {N}orthern {I}taly {U}niversity {H}ospital},
    journal = {{Clin Chem Lab Med}},
    year = {2020},
    volume = {0},
    number = {0},
    doi = {10.1515/cclm-2020-0815},
    publisher = {Walter de Gruyter {GmbH}},
    }
  • [DOI] U. Felgenhauer, A. Schoen, H. H. Gad, R. Hartmann, A. R. Schaubmar, K. Failing, C. Drosten, and F. Weber, “Inhibition of SARS-CoV-2 by type I and type III interferons,” J Biol Chem, p. jbc.AC120.013788, 2020.
    [Bibtex]
    @Article{Felgenhauer:20,
    author = {Ulrike Felgenhauer and Andreas Schoen and Hans Henrik Gad and Rune Hartmann and Andreas R Schaubmar and Klaus Failing and Christian Drosten and Friedemann Weber},
    title = {Inhibition of {SARS}-{CoV}-2 by type {I} and type {III} interferons},
    journal = {{J Biol Chem}},
    year = {2020},
    pages = {jbc.AC120.013788},
    doi = {10.1074/jbc.ac120.013788},
    publisher = {American Society for Biochemistry {\&} Molecular Biology ({ASBMB})},
    }
  • [DOI] A. Torneri, P. Libin, J. Vanderlocht, A. Vandamme, J. Neyts, and N. Hens, “A prospect on the use of antiviral drugs to control local outbreaks of COVID-19,” BMC Med, vol. 18, p. 191, 2020.
    [Bibtex]
    @Article{Torneri:20,
    author = {Andrea Torneri and Pieter Libin and Joris Vanderlocht and Anne-Mieke Vandamme and Johan Neyts and Niel Hens},
    title = {A prospect on the use of antiviral drugs to control local outbreaks of {COVID}-19},
    journal = {{BMC Med}},
    year = {2020},
    volume = {18},
    pages = {191},
    doi = {10.1186/s12916-020-01636-4},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] M. Muenchhoff, H. Mairhofer, H. Nitschko, N. Grzimek-Koschewa, D. Hoffmann, A. Berger, H. Rabenau, M. Widera, N. Ackermann, R. Konrad, S. Zange, A. Graf, S. Krebs, H. Blum, A. Sing, B. Liebl, R. Wölfel, S. Ciesek, C. Drosten, U. Protzer, S. Boehm, and O. T. Keppler, “Multicentre comparison of quantitative PCR-based assays to detect SARS-CoV-2, Germany, March 2020,” Euro Surveill, vol. 25, iss. 24, p. 2001057, 2020.
    [Bibtex]
    @Article{Muenchhoff:20,
    author = {Maximilian Muenchhoff and Helga Mairhofer and Hans Nitschko and Natascha Grzimek-Koschewa and Dieter Hoffmann and Annemarie Berger and Holger Rabenau and Marek Widera and Nikolaus Ackermann and Regina Konrad and Sabine Zange and Alexander Graf and Stefan Krebs and Helmut Blum and Andreas Sing and Bernhard Liebl and Roman Wölfel and Sandra Ciesek and Christian Drosten and Ulrike Protzer and Stephan Boehm and Oliver T Keppler},
    title = {Multicentre comparison of quantitative {PCR}-based assays to detect {SARS}-{CoV}-2, {G}ermany, {M}arch 2020},
    journal = {{Euro Surveill}},
    year = {2020},
    volume = {25},
    number = {24},
    pages = {2001057},
    doi = {10.2807/1560-7917.es.2020.25.24.2001057},
    publisher = {European Centre for Disease Control and Prevention ({ECDC})},
    }
  • [DOI] D. J. Baker, G. L. Kay, A. Aydin, T. Le-Viet, S. Rudder, A. P. Tedim, A. Kolyva, M. Diaz, L. O. de Martins, N. Alikhan, L. Meadows, A. Bell, A. V. Gutierrez, A. J. Trotter, N. M. Thomson, R. Gilroy, L. Griffith, E. M. Adriaenssens, R. Stanley, I. G. Charles, N. Elumogo, J. Wain, R. Prakash, E. Meader, A. E. Mather, M. A. Webber, S. Dervisevic, A. J. Page, and J. O’Grady, “CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing,” bioRxiv, 2020.
    [Bibtex]
    @Article{Baker:20,
    author = {Dave J. Baker and Gemma L. Kay and Alp Aydin and Thanh Le-Viet and Steven Rudder and Ana P. Tedim and Anastasia Kolyva and Maria Diaz and Leonardo de Oliveira Martins and Nabil-Fareed Alikhan and Lizzie Meadows and Andrew Bell and Ana Victoria Gutierrez and Alexander J. Trotter and Nicholas M. Thomson and Rachel Gilroy and Luke Griffith and Evelien M. Adriaenssens and Rachael Stanley and Ian G. Charles and Ngozi Elumogo and John Wain and Reenesh Prakash and Emma Meader and Alison E. Mather and Mark A. Webber and Samir Dervisevic and Andrew J. Page and Justin O'Grady},
    title = {{CoronaHiT}: large scale multiplexing of {SARS}-{CoV}-2 genomes using {N}anopore sequencing},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.24.162156},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. Lemey, S. Hong, V. Hill, G. Baele, C. Poletto, V. Colizza, Á. O’Toole, J. T. McCrone, K. G. Andersen, M. Worobey, M. I. Nelson, A. Rambaut, and M. A. Suchard, “Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study,” bioRxiv, 2020.
    [Bibtex]
    @Article{Lemey:20,
    author = {Philippe Lemey and Samuel Hong and Verity Hill and Guy Baele and Chiara Poletto and Vittoria Colizza and {\'{A}}ine O'Toole and John T. McCrone and Kristian G. Andersen and Michael Worobey and Martha I. Nelson and Andrew Rambaut and Marc A. Suchard},
    title = {Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a {SARS}-{CoV}-2 case study},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.22.165464},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] F. Kurth, M. Roennefarth, C. Thibeault, V. M. Corman, H. Müller-Redetzky, M. Mittermaier, C. Ruwwe-Glösenkamp, K. M. Heim, A. Krannich, S. Zvorc, S. Schmidt, L. Kretzler, C. Dang-Heine, M. Rose, M. Hummel, A. Hocke, R. H. Hübner, B. Opitz, M. A. Mall, J. Röhmel, U. Landmesser, B. Pieske, S. Knauss, M. Endres, J. Spranger, F. P. Mockenhaupt, F. Tacke, S. Treskatsch, S. Angermair, B. Siegmund, C. Spies, S. Weber-Carstens, K. Eckardt, D. Schürmann, A. Uhrig, M. S. Stegemann, T. Zoller, C. Drosten, N. Suttorp, M. Witzenrath, S. Hippenstiel, C. von Kalle, and L. E. Sander, “Studying the pathophysiology of coronavirus disease 2019: a protocol for the Berlin prospective COVID-19 patient cohort (Pa-COVID-19),” Infection, 2020.
    [Bibtex]
    @Article{Kurth:20,
    author = {Florian Kurth and Maria Roennefarth and Charlotte Thibeault and Victor M. Corman and Holger Müller-Redetzky and Mirja Mittermaier and Christoph Ruwwe-Glösenkamp and Katrin M. Heim and Alexander Krannich and Saskia Zvorc and Sein Schmidt and Lucie Kretzler and Chantip Dang-Heine and Matthias Rose and Michael Hummel and Andreas Hocke and Ralf H. Hübner and Bastian Opitz and Marcus A. Mall and Jobst Röhmel and Ulf Landmesser and Burkert Pieske and Samuel Knauss and Matthias Endres and Joachim Spranger and Frank P. Mockenhaupt and Frank Tacke and Sascha Treskatsch and Stefan Angermair and Britta Siegmund and Claudia Spies and Steffen Weber-Carstens and Kai-Uwe Eckardt and Dirk Schürmann and Alexander Uhrig and Miriam S. Stegemann and Thomas Zoller and Christian Drosten and Norbert Suttorp and Martin Witzenrath and Stefan Hippenstiel and Christof von Kalle and Leif Erik Sander},
    title = {Studying the pathophysiology of coronavirus disease 2019: a protocol for the {B}erlin prospective {COVID}-19 patient cohort ({Pa}-{COVID}-19)},
    journal = {Infection},
    year = {2020},
    doi = {10.1007/s15010-020-01464-x},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] I. Manfredonia, C. Nithin, A. Ponce-Salvatierra, P. Ghosh, T. K. Wirecki, T. Marinus, N. S. Ogando, E. J. Snider, M. J. van Hemert, J. M. Bujnicki, and D. Incarnato, “Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures,” bioRxiv, 2020.
    [Bibtex]
    @Article{Manfredonia:20,
    author = {Ilaria Manfredonia and Chandran Nithin and Almudena Ponce-Salvatierra and Pritha Ghosh and Tomasz K. Wirecki and Tycho Marinus and Natacha S. Ogando and Eric J. Snider and Martijn J. van Hemert and Janusz M. Bujnicki and Danny Incarnato},
    title = {Genome-wide mapping of therapeutically-relevant {SARS}-{CoV}-2 {RNA} structures},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.15.151647},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] D. S. da Candido, I. M. Claro, J. G. de Jesus, W. M. de Souza, F. R. R. Moreira, S. Dellicour, T. A. Mellan, L. du Plessis, R. H. M. Pereira, F. C. S. da Sales, E. R. Manuli, J. Theze, L. Almeida, M. T. de Menezes, C. M. Voloch, M. J. Fumagalli, T. M. de Coletti, C. A. M. Silva, M. S. Ramundo, M. R. Amorim, H. Hoeltgebaum, S. Mishra, M. Gill, L. M. Carvalho, L. F. Buss, C. A. Prete, J. Ashworth, H. Nakaya, P. S. da Peixoto, O. J. Brady, S. M. Nicholls, A. Tanuri, A. D. Rossi, C. K. V. Braga, A. L. Gerber, A. P. Guimaraes, N. Gaburo, C. S. Alencar, A. C. S. de Ferreira, C. X. Lima, J. E. Levi, C. Granato, G. M. Ferreira, R. S. da Francisco, F. Granja, M. T. Garcia, M. L. Moretti, M. W. Perroud, T. M. P. P. Castineiras, C. D. S. Lazari, S. C. Hill, A. A. S. de Santos, C. L. Simeoni, J. Forato, A. C. Sposito, A. Z. Schreiber, M. N. N. Santos, C. Z. Sa, R. P. Souza, L. C. R. Moreira, M. M. Teixeira, J. Hubner, P. A. F. Leme, R. G. Moreira, M. L. Nogueira, N. Ferguson, S. F. Costa, J. L. Proenca-Modena, A. T. Vasconcelos, S. Bhatt, P. Lemey, C. Wu, A. Rambaut, N. J. Loman, R. S. Aguiar, O. G. Pybus, E. C. Sabino, and N. R. Faria, “Evolution and epidemic spread of SARS-CoV-2 in Brazil,” medRxiv, 2020.
    [Bibtex]
    @Article{SilvaCandido:20,
    author = {Darlan da Silva Candido and Ingra Morales Claro and Jaqueline Goes de Jesus and William Marciel de Souza and Filipe Romero Rebello Moreira and Simon Dellicour and Thomas A. Mellan and Louis du Plessis and Rafael Henrique Moraes Pereira and Flavia Cristina da Silva Sales and Erika Regina Manuli and Julien Theze and Luis Almeida and Mariane Talon de Menezes and Carolina Moreira Voloch and Marcilio Jorge Fumagalli and Thais de Moura Coletti and Camila Alves Maia Silva and Mariana Severo Ramundo and Mariene Ribeiro Amorim and Henrique Hoeltgebaum and Swapnil Mishra and Mandev Gill and Luiz Max Carvalho and Lewis Fletcher Buss and Carlos Augusto Prete and Jordan Ashworth and Helder Nakaya and Pedro da Silva Peixoto and Oliver J Brady and Samuel M. Nicholls and Amilcar Tanuri and Atila Duque Rossi and Carlos Kaue Vieira Braga and Alexandra Lehmkuhl Gerber and Ana Paula Guimaraes and Nelson Gaburo and Cecilia Salete Alencar and Alessandro Clayton de Souza Ferreira and Cristiano Xavier Lima and Jose Eduardo Levi and Celso Granato and Giula Magalhaes Ferreira and Ronaldo da Silva Francisco and Fabiana Granja and Marcia Teixeira Garcia and Maria Luiza Moretti and Mauricio Wesley Perroud and Terezinha Marta Pereira Pinto Castineiras and Carolina Dos Santos Lazari and Sarah C Hill and Andreza Aruska de Souza Santos and Camila Lopes Simeoni and Julia Forato and Andrei Carvalho Sposito and Angelica Zaninelli Schreiber and Magnun Nueldo Nunes Santos and Camila Zolini Sa and Renan Pedra Souza and Luciana Cunha Resende Moreira and Mauro Martins Teixeira and Josy Hubner and Patricia Asfora Falabella Leme and Rennan Garcias Moreira and Mauricio Lacerda Nogueira and Neil Ferguson and Silvia Figueiredo Costa and Jose Luiz Proenca-Modena and Ana Tereza Vasconcelos and Samir Bhatt and Philippe Lemey and Chieh-Hsi Wu and Andrew Rambaut and Nick J Loman and Renato Santana Aguiar and Oliver G Pybus and Ester Cerdeira Sabino and Nuno Rodrigues Faria},
    title = {Evolution and epidemic spread of {SARS}-{CoV}-2 in {Brazil}},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.11.20128249},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] J. Singer, R. J. Gifford, M. Cotten, and D. L. Robertson, “CoV-GLUE: a web application for tracking SARS-CoV-2 genomic variation,” Preprints, 2020.
    [Bibtex]
    @Article{Singer:20,
    author = {Joshua Singer and Robert J. Gifford and Matthew Cotten and David L. Robertson},
    title = {{CoV}-{GLUE}: A Web Application for Tracking {SARS}-{CoV}-2 Genomic Variation},
    journal = {Preprints},
    year = {2020},
    doi = {10.20944/preprints202006.0225.v1},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] R. Martin, H. F. Löchel, M. Welzel, G. Hattab, A. Hauschild, and D. Heider, “CORDITE: the curated CORona drug InTERactions database for SARS-CoV-2,” iScience, vol. 23, iss. 7, p. 101297, 2020.
    [Bibtex]
    @Article{Martin:20,
    author = {Roman Martin and Hannah F. Löchel and Marius Welzel and Georges Hattab and Anne-Christin Hauschild and Dominik Heider},
    title = {{CORDITE}: The Curated {CORona} Drug {InTERactions} Database for {SARS}-{CoV}-2},
    journal = {{iScience}},
    year = {2020},
    volume = {23},
    number = {7},
    pages = {101297},
    doi = {10.1016/j.isci.2020.101297},
    publisher = {Elsevier {BV}},
    }
  • [DOI] A. Stukalov, V. Girault, V. Grass, V. Bergant, O. Karayel, C. Urban, D. A. Haas, Y. Huang, L. Oubraham, A. Wang, S. M. Hamad, A. Piras, M. Tanzer, F. M. Hansen, T. Enghleitner, M. Reinecke, T. M. Lavacca, R. Ehmann, R. Wölfel, J. Jores, B. Kuster, U. Protzer, R. Rad, J. Ziebuhr, V. Thiel, P. Scaturro, M. Mann, and A. Pichlmair, “Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV,” bioRxiv, 2020.
    [Bibtex]
    @Article{Stukalov:20,
    author = {Alexey Stukalov and Virginie Girault and Vincent Grass and Valter Bergant and Ozge Karayel and Christian Urban and Darya A. Haas and Yiqi Huang and Lila Oubraham and Anqi Wang and Sabri M. Hamad and Antonio Piras and Maria Tanzer and Fynn M. Hansen and Thomas Enghleitner and Maria Reinecke and Teresa M. Lavacca and Rosina Ehmann and Roman Wölfel and Jörg Jores and Bernhard Kuster and Ulrike Protzer and Roland Rad and John Ziebuhr and Volker Thiel and Pietro Scaturro and Matthias Mann and Andreas Pichlmair},
    title = {Multi-level proteomics reveals host-perturbation strategies of {SARS}-{CoV}-2 and {SARS}-{CoV}},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.17.156455},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] C. Conzelmann, R. Groß, T. L. Meister, D. Todt, A. Krawczyk, U. Dittmer, S. Stenger, J. Münch, E. Steinmann, J. A. Müller, and S. Pfaender, “Holder pasteurization inactivates SARS-CoV-2 in human breast milk,” bioRxiv, 2020.
    [Bibtex]
    @Article{Conzelmann:20,
    author = {Carina Conzelmann and Rüdiger Gro{\ss} and Toni Luise Meister and Daniel Todt and Adalbert Krawczyk and Ulf Dittmer and Steffen Stenger and Jan Münch and Eike Steinmann and Janis A Müller and Stephanie Pfaender},
    title = {Holder Pasteurization Inactivates {SARS}-{CoV}-2 in Human Breast Milk},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.17.155689},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] N. Clementi, R. Ferrarese, E. Criscuolo, R. A. Diotti, M. Castelli, C. Scagnolari, R. Burioni, G. Antonelli, M. Clementi, and N. Mancini, “Interferon-$\upbeta$ 1a inhibits SARS-CoV-2 in vitro when administered after virus infection,” J Infect Dis, p. jiaa350, 2020.
    [Bibtex]
    @Article{Clementi:20a,
    author = {Nicola Clementi and Roberto Ferrarese and Elena Criscuolo and Roberta Antonia Diotti and Matteo Castelli and Carolina Scagnolari and Roberto Burioni and Guido Antonelli and Massimo Clementi and Nicasio Mancini},
    title = {Interferon-$\upbeta$ 1a inhibits {SARS}-{CoV}-2 in vitro when administered after virus infection},
    journal = {{J Infect Dis}},
    year = {2020},
    pages = {jiaa350},
    doi = {10.1093/infdis/jiaa350},
    publisher = {Oxford University Press ({OUP})},
    }
  • [DOI] J. Meinhardt, J. Radke, C. Dittmayer, R. Mothes, J. Franz, M. Laue, J. Schneider, S. Brünink, O. Hassan, W. Stenzel, M. Windgassen, L. Rößler, H. Goebel, H. Martin, A. Nitsche, W. J. Schulz-Schaeffer, S. Hakroush, M. S. Winkler, B. Tampe, S. Elezkurtaj, D. Horst, L. Oesterhelweg, M. Tsokos, B. I. Heppner, C. Stadelmann, C. Drosten, V. M. Corman, H. Radbruch, and F. L. Heppner, “Olfactory transmucosal SARS-CoV-2 invasion as port of Central Nervous System entry in COVID-19 patients,” bioRxiv, 2020.
    [Bibtex]
    @Article{Meinhardt:20,
    author = {Jenny Meinhardt and Josefine Radke and Carsten Dittmayer and Ronja Mothes and Jonas Franz and Michael Laue and Julia Schneider and Sebastian Brünink and Olga Hassan and Werner Stenzel and Marc Windgassen and Larissa Rö{\ss}ler and Hans-Hilmar Goebel and Hubert Martin and Andreas Nitsche and Walter J. Schulz-Schaeffer and Samy Hakroush and Martin S. Winkler and Björn Tampe and Sefer Elezkurtaj and David Horst and Lars Oesterhelweg and Michael Tsokos and Barbara Ingold Heppner and Christine Stadelmann and Christian Drosten and Victor Max Corman and Helena Radbruch and Frank L. Heppner},
    title = {Olfactory transmucosal {SARS}-{CoV}-2 invasion as port of {Central Nervous System} entry in {COVID}-19 patients},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.04.135012},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] K. Wernike, M. Keller, F. J. Conraths, T. C. Mettenleiter, M. H. Groschup, and M. Beer, “Pitfalls in SARS-CoV-2 PCR diagnostics,” Transbound Emerg Dis, 2020.
    [Bibtex]
    @Article{Wernike:20a,
    author = {Kerstin Wernike and Markus Keller and Franz J. Conraths and Thomas C. Mettenleiter and Martin H. Groschup and Martin Beer},
    title = {Pitfalls in {SARS}-{CoV}-2 {PCR} diagnostics},
    journal = {{Transbound Emerg Dis}},
    year = {2020},
    doi = {10.1111/tbed.13684},
    }
  • [DOI] T. C. Jones, B. Mühlemann, T. Veith, G. Biele, M. Zuchowski, J. Hoffmann, A. Stein, A. Edelmann, V. M. Corman, and C. Drosten, “An analysis of SARS-CoV-2 viral load by patient age,” medRxiv, 2020.
    [Bibtex]
    @Article{Jones:20,
    author = {Terry C Jones and Barbara Mühlemann and Talitha Veith and Guido Biele and Marta Zuchowski and Jörg Hoffmann and Angela Stein and Anke Edelmann and Victor Max Corman and Christian Drosten},
    title = {An analysis of {SARS}-{CoV}-2 viral load by patient age},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.08.20125484},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] A. D. S. Filipe, J. Shepherd, T. Williams, J. Hughes, E. Aranday-Cortes, P. Asamaphan, C. Balcazar, K. Brunker, S. Carmichael, R. Dewar, M. D. Gallagher, R. Gunson, A. Ho, N. Jesudason, N. Johnson, C. M. E. Leitch, K. Li, A. MacLean, D. Mair, S. E. McDonald, M. McHugh, J. Nichols, M. Niebel, K. Nomikou, R. J. Orton, A. O’Toole, M. Palmarini, Y. A. Parr, A. Rambaut, S. Rooke, S. Shaaban, R. Shah, J. B. Singer, K. Smollett, I. Starinskij, L. Tong, V. B. Sreenu, E. Wastnedge, D. L. Robertson, M. T. G. Holden, K. Templeton, and E. C. Thomson, “Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence,” medRxiv, 2020.
    [Bibtex]
    @Article{Filipe:20,
    author = {Ana Da Silva Filipe and James Shepherd and Thomas Williams and Joseph Hughes and Elihu Aranday-Cortes and Patawee Asamaphan and Carlos Balcazar and Kirstyn Brunker and Stephen Carmichael and Rebecca Dewar and Michael D Gallagher and Rory Gunson and Antonia Ho and Natasha Jesudason and Natasha Johnson and E. Carol McWilliam Leitch and Kathy Li and Alasdair MacLean and Daniel Mair and Sarah E. McDonald and Martin McHugh and Jenna Nichols and Marc Niebel and Kyriaki Nomikou and Richard J. Orton and Aine O'Toole and Massimo Palmarini and Yasmin A. Parr and Andrew Rambaut and Stefan Rooke and Sharif Shaaban and Rajiv Shah and Joshua B. Singer and Katherine Smollett and Igor Starinskij and Lily Tong and Vattipally B. Sreenu and Elizabeth Wastnedge and David L. Robertson and Matthew T.G. Holden and Kate Templeton and Emma C. Thomson},
    title = {Genomic epidemiology of {SARS}-{CoV}-2 spread in {S}cotland highlights the role of {E}uropean travel in {COVID}-19 emergence},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.06.08.20124834},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. Murcia, D. Streiker, A. D. S. Philipe, D. L. Robertson, R. Jarrett, B. Willett, M. Hosie, R. Biek, K. Allan, and W. Weir, “Send cat and dog samples to test for SARS-CoV-2,” Vet Rec, vol. 186, p. 571, 2020.
    [Bibtex]
    @Article{Murcia:20,
    author = {Pablo Murcia and Daniel Streiker and Ana Da Silva Philipe and David L. Robertson and Ruth Jarrett and Brian Willett and Margaret Hosie and Roman Biek and Kathryn Allan and William Weir},
    title = {Send cat and dog samples to test for {SARS}-{CoV}-2},
    journal = {{Vet Rec}},
    year = {2020},
    volume = {186},
    pages = {571},
    doi = {10.1136/vr.m2019},
    publisher = {{BMJ}},
    }
  • [DOI] A. Vandamme and T. Nguyen, “Belgium – concerns about coronavirus contact-tracing apps,” Nature, vol. 581, p. 384, 2020.
    [Bibtex]
    @Article{Vandamme:20,
    author = {Anne-Mieke Vandamme and ToTran Nguyen},
    title = {{B}elgium -- concerns about coronavirus contact-tracing apps},
    journal = {Nature},
    year = {2020},
    volume = {581},
    pages = {384},
    doi = {10.1038/d41586-020-01552-w},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] B. Bartolini, M. Rueca, C. E. M. Gruber, F. Messina, F. Carletti, E. Giombini, E. Lalle, L. Bordi, G. Matusali, F. Colavita, C. Castilletti, F. Vairo, G. Ippolito, M. R. Capobianchi, and A. D. Caro, “SARS-CoV-2 phylogenetic analysis, Lazio region, Italy, February–March 2020,” Emerg Infect Dis, vol. 26, iss. 8, 2020.
    [Bibtex]
    @Article{Bartolini:20,
    author = {Barbara Bartolini and Martina Rueca and Cesare Ernesto Maria Gruber and Francesco Messina and Fabrizio Carletti and Emanuela Giombini and Eleonora Lalle and Licia Bordi and Giulia Matusali and Francesca Colavita and Concetta Castilletti and Francesco Vairo and Giuseppe Ippolito and Maria Rosaria Capobianchi and Antonino Di Caro},
    title = {{SARS}-{CoV}-2 Phylogenetic Analysis, {L}azio Region, {I}taly, {F}ebruary--{M}arch 2020},
    journal = {{Emerg Infect Dis}},
    year = {2020},
    volume = {26},
    number = {8},
    doi = {10.3201/eid2608.201525},
    publisher = {Centers for Disease Control and Prevention ({CDC})},
    }
  • [DOI] A. Kratzel, S. Steiner, D. Todt, P. V’Kovski, Y. Brueggemann, J. Steinmann, E. Steinmann, V. Thiel, and S. Pfaender, “Temperature-dependent surface stability of SARS-CoV-2,” J Infect, 2020.
    [Bibtex]
    @Article{Kratzel:20a,
    author = {Annika Kratzel and Silvio Steiner and Daniel Todt and Philip V'Kovski and Yannick Brueggemann and Joerg Steinmann and Eike Steinmann and Volker Thiel and Stephanie Pfaender},
    title = {Temperature-dependent surface stability of {SARS}-{CoV}-2},
    journal = {{J Infect}},
    year = {2020},
    doi = {10.1016/j.jinf.2020.05.074},
    publisher = {Elsevier {BV}},
    }
  • [DOI] S. Gryseels, L. D. Bruyn, R. Gyselings, S. Calvignac-Spencer, F. Leendertz, and H. Leirs, “Risk of human-to-wildlife transmission of SARS-CoV-2,” Preprints, 2020.
    [Bibtex]
    @Article{Gryseels:20a,
    author = {Sophie Gryseels and Luc De Bruyn and Ralf Gyselings and S{\'{e}}bastien Calvignac-Spencer and Fabian Leendertz and Herwig Leirs},
    title = {Risk of Human-to-Wildlife Transmission of {SARS}-{CoV}-2},
    journal = {Preprints},
    year = {2020},
    doi = {10.20944/preprints202005.0141.v1},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] K. Kitsou, A. Kotanidou, D. Paraskevis, T. Karamitros, A. Katzourakis, R. Tedder, T. Hurst, S. Sapounas, A. Kotsinas, V. Gorgoulis, V. Spoulou, S. Tsiodras, P. Lagiou, and G. Magiorkinis, “Upregulation of human endogenous retroviruses in bronchoalveolar lavage fluid of COVID-19 patients,” medRxiv, 2020.
    [Bibtex]
    @Article{Kitsou:20,
    author = {Konstantina Kitsou and Anastasia Kotanidou and Dimitrios Paraskevis and Timokratis Karamitros and Aris Katzourakis and Richard Tedder and Tara Hurst and Spyros Sapounas and Athanassios Kotsinas and Vassilis Gorgoulis and Vana Spoulou and Sotirios Tsiodras and Pagona Lagiou and Gkikas Magiorkinis},
    title = {Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of {COVID}-19 Patients},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.10.20096958},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Holwerda, P. V’Kovski, M. Wider, V. Thiel, and R. Dijkman, “Identification of five antiviral compounds from the Pandemic Response Box targeting SARS-CoV-2,” bioRxiv, 2020.
    [Bibtex]
    @Article{Holwerda:20,
    author = {Melle Holwerda and Philip V'Kovski and Manon Wider and Volker Thiel and Ronald Dijkman},
    title = {Identification of five antiviral compounds from the {P}andemic {R}esponse {B}ox targeting {SARS}-{CoV}-2},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.17.100404},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] V. Sypsa, S. Roussos, D. Paraskevis, T. Lytras, S. Tsiodras, and A. Hatzakis, “Modelling the SARS-CoV-2 first epidemic wave in Greece: social contact patterns for impact assessment and an exit strategy from social distancing measures,” medRxiv, 2020.
    [Bibtex]
    @Article{Sypsa:20,
    author = {Vana Sypsa and Sotirios Roussos and Dimitrios Paraskevis and Theodore Lytras and Sotirios Tsiodras and Angelos Hatzakis},
    title = {Modelling the {SARS}-{CoV}-2 first epidemic wave in {G}reece: social contact patterns for impact assessment and an exit strategy from social distancing measures},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.27.20114017},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] G. Kemenesi, S. Zeghbib, B. A. Somogyi, G. E. Tóth, K. Bányai, N. Solymosi, P. M. Szabo, I. Szabó, Ádám. Bálint, P. Urbán, R. Herczeg, A. Gyenesei, Á. Nagy, C. I. Pereszlényi, G. C. Babinszky, G. Dudás, G. Terhes, V. Zöldi, R. Lovas, S. Tenczer, L. Kornya, and F. Jakab, “Multiple SARS-CoV-2 introductions shaped the early outbreak in Central Eastern Europe: comparing Hungarian data to a worldwide sequence data-matrix,” bioRxiv, 2020.
    [Bibtex]
    @Article{Kemenesi:20a,
    author = {G{\'{a}}bor Kemenesi and Safia Zeghbib and Bal{\'{a}}zs A Somogyi and G{\'{a}}bor Endre T{\'{o}}th and Kriszti{\'{a}}n B{\'{a}}nyai and Norbert Solymosi and Peter M Szabo and Istv{\'{a}}n Szab{\'{o}} and {\'{A}}d{\'{a}}m B{\'{a}}lint and P{\'{e}}ter Urb{\'{a}}n and R{\'{o}}bert Herczeg and Attila Gyenesei and {\'{A}}gnes Nagy and Csaba Istv{\'{a}}n Pereszl{\'{e}}nyi and Gergely Csaba Babinszky and G{\'{a}}bor Dud{\'{a}}s and Gabriella Terhes and Viktor Zöldi and R{\'{o}}bert Lovas and Szabolcs Tenczer and L{\'{a}}szl{\'{o}} Kornya and Ferenc Jakab},
    title = {Multiple {SARS}-{CoV}-2 introductions shaped the early outbreak in {C}entral {E}astern {E}urope: comparing {H}ungarian data to a worldwide sequence data-matrix},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.06.080119},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] S. Pach, T. N. Nguyen, J. Trimpert, D. Kunec, N. Osterrieder, and G. Wolber, “ACE2-variants indicate potential SARS-CoV-2-susceptibility in animals: an extensive molecular dynamics study,” bioRxiv, 2020.
    [Bibtex]
    @Article{Pach:20,
    author = {Szymon Pach and Trung Ngoc Nguyen and Jakob Trimpert and Dusan Kunec and Nikolaus Osterrieder and Gerhard Wolber},
    title = {{ACE}2-Variants Indicate Potential {SARS}-{CoV}-2-Susceptibility in Animals: An Extensive Molecular Dynamics Study},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.14.092767},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Worobey, J. Pekar, B. B. Larsen, M. I. Nelson, V. Hill, J. B. Joy, A. Rambaut, M. A. Suchard, J. O. Wertheim, and P. Lemey, “The emergence of SARS-CoV-2 in Europe and the US,” bioRxiv, 2020.
    [Bibtex]
    @Article{Worobey:20,
    author = {Michael Worobey and Jonathan Pekar and Brendan B. Larsen and Martha I. Nelson and Verity Hill and Jeffrey B. Joy and Andrew Rambaut and Marc A. Suchard and Joel O. Wertheim and Philippe Lemey},
    title = {The emergence of {SARS}-{CoV}-2 in {Europe} and the {US}},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.21.109322},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] O. A. MacLean, S. Lytras, J. B. Singer, S. Weaver, S. K. L. Pond, and D. L. Robertson, “Evidence of significant natural selection in the evolution of SARS-CoV-2 in bats, not humans,” bioRxiv, 2020.
    [Bibtex]
    @Article{MacLean:20,
    author = {Oscar A. MacLean and Spyros Lytras and Joshua B. Singer and Steven Weaver and Sergei L. Kosakovsky Pond and David L. Robertson},
    title = {Evidence of significant natural selection in the evolution of {SARS}-{CoV}-2 in bats, not humans},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.28.122366},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] F. Hufsky, K. Lamkiewicz, A. Almeida, A. Aouacheria, C. Arighi, A. Bateman, J. Baumbach, N. Beerenwinkel, C. Brandt, M. Cacciabue, S. Chuguransky, O. Drechsel, R. D. Finn, A. Fritz, S. Fuchs, G. Hattab, A. Hauschild, D. Heider, M. Hoffmann, M. Hölzer, S. Hoops, L. Kaderali, I. Kalvari, M. von Kleist, R. Kmiecinski, D. Kühnert, G. Lasso, P. Libin, M. List, H. F. Löchel, M. J. Martin, R. Martin, J. Matschinske, A. C. McHardy, P. Mendes, J. Mistry, V. Navratil, E. Nawrocki, Á. N. O’Toole, N. Palacios-Ontiveros, A. I. Petrov, G. Rangel-Piñeros, N. Redaschi, S. Reimering, K. Reinert, A. Reyes, L. Richardson, D. L. Robertson, S. Sadegh, J. B. Singer, K. Theys, C. Upton, M. Welzel, L. Williams, and M. Marz, “Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research,” Preprints, 2020.
    [Bibtex]
    @Article{Hufsky:20,
    author = {Franziska Hufsky and Kevin Lamkiewicz and Alexandre Almeida and Abdel Aouacheria and Cecilia Arighi and Alex Bateman and Jan Baumbach and Niko Beerenwinkel and Christian Brandt and Marco Cacciabue and Sara Chuguransky and Oliver Drechsel and Robert D. Finn and Adrian Fritz and Stephan Fuchs and Georges Hattab and Anne-Christin Hauschild and Dominik Heider and Marie Hoffmann and Martin Hölzer and Stefan Hoops and Lars Kaderali and Ioanna Kalvari and Max von Kleist and Ren\'{e} Kmiecinski and Denise Kühnert and Gorka Lasso and Pieter Libin and Markus List and Hannah F. Löchel and Maria J. Martin and Roman Martin and Julian Matschinske and Alice C. McHardy and Pedro Mendes and Jaina Mistry and Vincent Navratil and Eric Nawrocki and {\'{A}}ine Niamh O'Toole and Nancy Palacios-Ontiveros and Anton I. Petrov and Guillermo Rangel-Pi{\~{n}}eros and Nicole Redaschi and Susanne Reimering and Knut Reinert and Alejandro Reyes and Lorna Richardson and David L. Robertson and Sepideh Sadegh and Joshua B. Singer and Kristof Theys and Chris Upton and Marius Welzel and Lowri Williams and Manja Marz},
    title = {Computational Strategies to Combat {COVID}-19: Useful Tools to Accelerate {SARS}-{CoV}-2 and Coronavirus Research},
    journal = {{Preprints}},
    year = {2020},
    doi = {10.20944/preprints202005.0376.v1},
    publisher = {{MDPI} {AG}},
    }
  • [DOI] G. Kemenesi, L. Kornya, G. E. Tóth, K. Kurucz, S. Zeghbib, B. A. Somogyi, V. Zöldi, P. Urbán, R. Herczeg, and F. Jakab, “Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary,” GeroScience, 2020.
    [Bibtex]
    @Article{Kemenesi:20,
    author = {G{\'{a}}bor Kemenesi and L{\'{a}}szl{\'{o}} Kornya and G{\'{a}}bor Endre T{\'{o}}th and Korn{\'{e}}lia Kurucz and Safia Zeghbib and Bal{\'{a}}zs A. Somogyi and Viktor Zöldi and P{\'{e}}ter Urb{\'{a}}n and R{\'{o}}bert Herczeg and Ferenc Jakab},
    title = {Nursing homes and the elderly regarding the {COVID}-19 pandemic: situation report from {H}ungary},
    journal = {{GeroScience}},
    year = {2020},
    doi = {10.1007/s11357-020-00195-z},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] W. Randazzo, P. Truchado, E. Cuevas-Ferrando, P. Simón, A. Allende, and G. S. Moragas, “SARS-CoV-2 RNA in wastewater anticipated COVID-19 occurrence in a low prevalence area,” Water Res, vol. 181, p. 115942, 2020.
    [Bibtex]
    @Article{Randazzo:20,
    author = {Walter Randazzo and Pilar Truchado and Enric Cuevas-Ferrando and Pedro Sim{\'{o}}n and Ana Allende and Gloria S{\'{a}}nchez Moragas},
    title = {{SARS}-{CoV}-2 {RNA} in wastewater anticipated {COVID}-19 occurrence in a low prevalence area},
    journal = {{Water Res}},
    year = {2020},
    volume = {181},
    pages = {115942},
    doi = {10.1016/j.watres.2020.115942},
    publisher = {Elsevier {BV}},
    }
  • [DOI] M. M. Böhmer, U. Buchholz, V. M. Corman, M. Hoch, K. Katz, D. V. Marosevic, S. Böhm, T. Woudenberg, N. Ackermann, R. Konrad, U. Eberle, B. Treis, A. Dangel, K. Bengs, V. Fingerle, A. Berger, S. Hörmansdorfer, S. Ippisch, B. Wicklein, A. Grahl, K. Pörtner, N. Muller, N. Zeitlmann, S. T. Boender, W. Cai, A. Reich, M. an der Heiden, U. Rexroth, O. Hamouda, J. Schneider, T. Veith, B. Mühlemann, R. Wölfel, M. Antwerpen, M. Walter, U. Protzer, B. Liebl, W. Haas, A. Sing, C. Drosten, and A. Zapf, “Investigation of a COVID-19 outbreak in Germany resulting from a single travel-associated primary case: a case series,” Lancet Infect Dis, 2020.
    [Bibtex]
    @Article{Böhmer:20,
    author = {Merle M Böhmer and Udo Buchholz and Victor M Corman and Martin Hoch and Katharina Katz and Durdica V Marosevic and Stefanie Böhm and Tom Woudenberg and Nikolaus Ackermann and Regina Konrad and Ute Eberle and Bianca Treis and Alexandra Dangel and Katja Bengs and Volker Fingerle and Anja Berger and Stefan Hörmansdorfer and Siegfried Ippisch and Bernd Wicklein and Andreas Grahl and Kirsten Pörtner and Nadine Muller and Nadine Zeitlmann and T Sonia Boender and Wei Cai and Andreas Reich and Maria an der Heiden and Ute Rexroth and Osamah Hamouda and Julia Schneider and Talitha Veith and Barbara Mühlemann and Roman Wölfel and Markus Antwerpen and Mathias Walter and Ulrike Protzer and Bernhard Liebl and Walter Haas and Andreas Sing and Christian Drosten and Andreas Zapf},
    title = {Investigation of a {COVID}-19 outbreak in {G}ermany resulting from a single travel-associated primary case: a case series},
    journal = {{Lancet Infect Dis}},
    year = {2020},
    doi = {10.1016/s1473-3099(20)30314-5},
    publisher = {Elsevier {BV}},
    }
  • [DOI] W. He, X. Ji, W. He, S. Dellicour, S. Wang, G. Li, L. Zhang, M. Gilbert, H. Zhu, G. Xing, M. Veit, Z. Huang, G. Han, Y. Huang, M. A. Suchard, G. Baele, P. Lemey, and S. Su, “Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus,” Mol Biol Evol, p. msaa117, 2020.
    [Bibtex]
    @Article{He:20,
    author = {Wan-Ting He and Xiang Ji and Wei He and Simon Dellicour and Shilei Wang and Gairu Li and Letian Zhang and Marius Gilbert and Henan Zhu and Gang Xing and Michael Veit and Zhen Huang and Guan-Zhu Han and Yaowei Huang and Marc A Suchard and Guy Baele and Philippe Lemey and Shuo Su},
    title = {Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus},
    journal = {{Mol Biol Evol}},
    year = {2020},
    pages = {msaa117},
    doi = {10.1093/molbev/msaa117},
    editor = {Sergei Kosakovsky Pond},
    publisher = {Oxford University Press ({OUP})},
    }
  • [DOI] G. D. Maganga, A. Pinto, I. M. Mombo, M. Madjitobaye, A. M. M. Beyeme, L. Boundenga, M. A. Gouilh, N. N’Dilimabaka, J. F. Drexler, C. Drosten, and E. M. Leroy, “Genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in Gabon,” Sci Rep, vol. 10, p. 7314, 2020.
    [Bibtex]
    @Article{Maganga:20,
    author = {Gael Darren Maganga and Anaïs Pinto and Illich Manfred Mombo and Mankomra Madjitobaye and Antoine Mitte Mbeang Beyeme and Larson Boundenga and Meriadeg Ar Gouilh and Nadine N'Dilimabaka and Jan Felix Drexler and Christian Drosten and Eric Maurice Leroy},
    title = {Genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in {G}abon},
    journal = {{Sci Rep}},
    year = {2020},
    volume = {10},
    pages = {7314},
    doi = {10.1038/s41598-020-64159-1},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] C. Mavian, S. K. Pond, S. Marini, B. R. Magalis, A. Vandamme, S. Dellicour, S. V. Scarpino, C. Houldcroft, J. Villabona-Arenas, T. K. Paisie, N. S. Trovão, C. Boucher, Y. Zhang, R. H. Scheuermann, O. Gascuel, T. T. Lam, M. A. Suchard, A. B. Abecasis, E. Wilkinson, T. de Oliveira, A. I. Bento, H. A. Schmidt, D. Martin, J. Hadfield, N. Faria, N. D. Grubaugh, R. A. Neher, G. Baele, P. Lemey, T. Stadler, J. Albert, K. A. Crandall, T. Leitner, A. Stamatakis, M. Prosperi, and M. Salemi, “Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable,” Proc Natl Acad Sci USA, vol. 117, iss. 23, p. 12522–12523, 2020.
    [Bibtex]
    @Article{Mavian:20,
    author = {Carla Mavian and Sergei Kosakovsky Pond and Simone Marini and Brittany Rife Magalis and Anne-Mieke Vandamme and Simon Dellicour and Samuel V. Scarpino and Charlotte Houldcroft and Julian Villabona-Arenas and Taylor K. Paisie and N{\'{\i}}dia S. Trov{\~{a}}o and Christina Boucher and Yun Zhang and Richard H. Scheuermann and Olivier Gascuel and Tommy Tsan-Yuk Lam and Marc A. Suchard and Ana B. Abecasis and Eduan Wilkinson and Tulio de Oliveira and Ana I. Bento and Heiko A. Schmidt and Darren Martin and James Hadfield and Nuno Faria and Nathan D. Grubaugh and Richard A. Neher and Guy Baele and Philippe Lemey and Tanja Stadler and Jan Albert and Keith A. Crandall and Thomas Leitner and Alexandros Stamatakis and Mattia Prosperi and Marco Salemi},
    title = {Sampling bias and incorrect rooting make phylogenetic network tracing of {SARS}-{COV}-2 infections unreliable},
    journal = {{Proc Natl Acad Sci USA}},
    year = {2020},
    volume = {117},
    number = {23},
    pages = {12522--12523},
    doi = {10.1073/pnas.2007295117},
    publisher = {Proceedings of the National Academy of Sciences},
    }
  • [DOI] T. T. N. Thao, F. Labroussaa, N. Ebert, P. V’Kovski, H. Stalder, J. Portmann, J. Kelly, S. Steiner, M. Holwerda, A. Kratzel, M. Gultom, K. Schmied, L. Laloli, L. Hüsser, M. Wider, S. Pfaender, D. Hirt, V. Cippà, S. Crespo-Pomar, S. Schröder, D. Muth, D. Niemeyer, V. Corman, M. A. Müller, C. Drosten, R. Dijkman, J. Jores, and V. Thiel, “Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform,” Nature, vol. 582, p. 561–565, 2020.
    [Bibtex]
    @Article{Thao:20,
    author = {Tran Thi Nhu Thao and Fabien Labroussaa and Nadine Ebert and Philip V'Kovski and Hanspeter Stalder and Jasmine Portmann and Jenna Kelly and Silvio Steiner and Melle Holwerda and Annika Kratzel and Mitra Gultom and Kimberly Schmied and Laura Laloli and Linda Hüsser and Manon Wider and Stephanie Pfaender and Dagny Hirt and Valentina Cipp{\`{a}} and Silvia Crespo-Pomar and Simon Schröder and Doreen Muth and Daniela Niemeyer and Victor Corman and Marcel A. Müller and Christian Drosten and Ronald Dijkman and Joerg Jores and Volker Thiel},
    title = {Rapid reconstruction of {SARS}-{CoV}-2 using a synthetic genomics platform},
    journal = {Nature},
    year = {2020},
    volume = {582},
    pages = {561--565},
    doi = {10.1038/s41586-020-2294-9},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] R. L. Chua, S. Lukassen, S. Trump, B. P. Hennig, D. Wendisch, F. Pott, O. Debnath, L. Thürmann, F. Kurth, J. Kazmierski, B. Timmermann, S. Twardziok, S. Schneider, F. Machleidt, H. Müller-Redetzky, A. Krannich, S. Schmidt, F. Balzer, J. Liebig, J. Loske, J. Eils, N. Ishaque, C. von Kalle, A. Hocke, M. Witzenrath, C. Goffinet, C. Drosten, S. Laudi, I. Lehmann, C. Conrad, L. Sander, and R. Eils, “Cross-talk between the airway epithelium and activated immune cells defines severity in COVID-19,” medRxiv, 2020.
    [Bibtex]
    @Article{Chua:20,
    author = {Robert Lorenz Chua and Soeren Lukassen and Saskia Trump and Bianca P Hennig and Daniel Wendisch and Fabian Pott and Olivia Debnath and Loreen Thürmann and Florian Kurth and Julia Kazmierski and Bernd Timmermann and Sven Twardziok and Stefan Schneider and Felix Machleidt and Holger Müller-Redetzky and Alexander Krannich and Sein Schmidt and Felix Balzer and Johannes Liebig and Jennifer Loske and Jürgen Eils and Naveed Ishaque and Christof von Kalle and Andreas Hocke and Martin Witzenrath and Christine Goffinet and Christian Drosten and Sven Laudi and Irina Lehmann and Christian Conrad and Leif-Erik Sander and Roland Eils},
    title = {Cross-talk between the airway epithelium and activated immune cells defines severity in {COVID}-19},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.29.20084327},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] S. Duchene, L. Featherstone, M. Haritopoulou-Sinanidou, A. Rambaut, P. Lemey, and G. Baele, “Temporal signal and the phylodynamic threshold of SARS-CoV-2,” bioRxiv, 2020.
    [Bibtex]
    @Article{Duchene:20,
    author = {Sebastian Duchene and Leo Featherstone and Melina Haritopoulou-Sinanidou and Andrew Rambaut and Philippe Lemey and Guy Baele},
    title = {Temporal signal and the phylodynamic threshold of {SARS}-{CoV}-2},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.05.04.077735},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] B. Rockx, T. Kuiken, S. Herfst, T. Bestebroer, M. M. Lamers, B. B. Oude Munnink, D. de Meulder, G. van Amerongen, J. van den Brand, N. M. A. Okba, D. Schipper, P. van Run, L. Leijten, R. Sikkema, E. Verschoor, B. Verstrepen, W. Bogers, J. Langermans, C. Drosten, M. F. van Vlissingen, R. Fouchier, R. de Swart, M. Koopmans, and B. L. Haagmans, “Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model,” Science, vol. 368, iss. 6494, p. 1012–1015, 2020.
    [Bibtex]
    @Article{Rockx:20,
    author = {Barry Rockx and Thijs Kuiken and Sander Herfst and Theo Bestebroer and Mart M. Lamers and Bas B. {Oude Munnink} and Dennis de Meulder and Geert van Amerongen and Judith van den Brand and Nisreen M. A. Okba and Debby Schipper and Peter van Run and Lonneke Leijten and Reina Sikkema and Ernst Verschoor and Babs Verstrepen and Willy Bogers and Jan Langermans and Christian Drosten and Martje Fentener van Vlissingen and Ron Fouchier and Rik de Swart and Marion Koopmans and Bart L. Haagmans},
    title = {Comparative pathogenesis of {COVID}-19, {MERS}, and {SARS} in a nonhuman primate model},
    journal = {Science},
    year = {2020},
    volume = {368},
    number = {6494},
    pages = {1012--1015},
    doi = {10.1126/science.abb7314},
    publisher = {American Association for the Advancement of Science ({AAAS})},
    }
  • [DOI] A. Kratzel, D. Todt, P. V’Kovski, S. Steiner, M. Gultom, T. T. N. Thao, N. Ebert, M. Holwerda, J. Steinmann, D. Niemeyer, R. Dijkman, G. Kampf, C. Drosten, E. Steinmann, V. Thiel, and S. Pfaender, “Inactivation of severe acute respiratory syndrome coronavirus 2 by WHO-recommended hand rub formulations and alcohols,” Emerg Infect Dis, vol. 26, iss. 7, p. 1592–1595, 2020.
    [Bibtex]
    @Article{Kratzel:20,
    author = {Annika Kratzel and Daniel Todt and Philip V'Kovski and Silvio Steiner and Mitra Gultom and Tran Thi Nhu Thao and Nadine Ebert and Melle Holwerda and Jörg Steinmann and Daniela Niemeyer and Ronald Dijkman and Günter Kampf and Christian Drosten and Eike Steinmann and Volker Thiel and Stephanie Pfaender},
    title = {Inactivation of Severe Acute Respiratory Syndrome Coronavirus 2 by {WHO}-Recommended Hand Rub Formulations and Alcohols},
    journal = {{Emerg Infect Dis}},
    year = {2020},
    volume = {26},
    number = {7},
    pages = {1592--1595},
    doi = {10.3201/eid2607.200915},
    publisher = {Centers for Disease Control and Prevention ({CDC})},
    }
  • [DOI] A. Shannon, N. T. Le, B. Selisko, C. Eydoux, K. Alvarez, J. Guillemot, E. Decroly, O. Peersen, F. Ferron, and B. Canard, “Remdesivir and SARS-CoV-2: Structural requirements at both nsp12 RdRp and nsp14 Exonuclease active-sites,” Antiviral Res, vol. 178, p. 104793, 2020.
    [Bibtex]
    @Article{Shannon:20,
    author = {Ashleigh Shannon and Nhung Thi-Tuyet Le and Barbara Selisko and Cecilia Eydoux and Karine Alvarez and Jean-Claude Guillemot and Etienne Decroly and Olve Peersen and Francois Ferron and Bruno Canard},
    title = {Remdesivir and {SARS}-{CoV}-2: {Structural} requirements at both nsp12 {RdRp} and nsp14 {Exonuclease} active-sites},
    journal = {{Antiviral Res}},
    year = {2020},
    volume = {178},
    pages = {104793},
    doi = {10.1016/j.antiviral.2020.104793},
    publisher = {Elsevier {BV}},
    }
  • [DOI] N. C. Gassen, J. Papies, T. Bajaj, F. Dethloff, J. Emanuel, K. Weckmann, D. E. Heinz, N. Heinemann, M. Lennarz, A. Richter, D. Niemeyer, V. M. Corman, P. Giavalisco, C. Drosten, and M. A. Müller, “Analysis of SARS-CoV-2-controlled autophagy reveals spermidine, MK-2206, and niclosamide as putative antiviral therapeutics,” bioRxiv, 2020.
    [Bibtex]
    @Article{Gassen:20,
    author = {Nils C. Gassen and Jan Papies and Thomas Bajaj and Frederik Dethloff and Jackson Emanuel and Katja Weckmann and Daniel E. Heinz and Nicolas Heinemann and Martina Lennarz and Anja Richter and Daniela Niemeyer and Victor M. Corman and Patrick Giavalisco and Christian Drosten and Marcel A. Müller},
    title = {Analysis of {SARS}-{CoV}-2-controlled autophagy reveals spermidine, {MK}-2206, and niclosamide as putative antiviral therapeutics},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.15.997254},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] D. Bestle, M. R. Heindl, H. Limburg, T. V. L. van, O. Pilgram, H. Moulton, D. A. Stein, K. Hardes, M. Eickmann, O. Dolnik, C. Rohde, S. Becker, H. Klenk, W. Garten, T. Steinmetzer, and E. Böttcher-Friebertshäuser, “TMPRSS2 and furin are both essential for proteolytic activation and spread of SARS-CoV-2 in human airway epithelial cells and provide promising drug targets,” bioRxiv, 2020.
    [Bibtex]
    @Article{Bestle:20,
    author = {Dorothea Bestle and Miriam Ruth Heindl and Hannah Limburg and Thuy Van Lam van and Oliver Pilgram and Hong Moulton and David A. Stein and Kornelia Hardes and Markus Eickmann and Olga Dolnik and Cornelius Rohde and Stephan Becker and Hans-Dieter Klenk and Wolfgang Garten and Torsten Steinmetzer and Eva Böttcher-Friebertshäuser},
    title = {{TMPRSS}2 and furin are both essential for proteolytic activation and spread of {SARS}-{CoV}-2 in human airway epithelial cells and provide promising drug targets},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.15.042085},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] V. Navratil, L. Lionnard, S. Longhi, M. Hardwick, C. Combet, and A. Aouacheria, “The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) envelope (E) protein harbors a conserved BH3-like sequence,” bioRxiv, 2020.
    [Bibtex]
    @Article{Navratil:20,
    author = {Vincent Navratil and Loic Lionnard and Sonia Longhi and Marie Hardwick and Christophe Combet and Abdel Aouacheria},
    title = {The severe acute respiratory syndrome coronavirus 2 ({SARS}-{CoV}-2) envelope ({E}) protein harbors a conserved {BH}3-like sequence},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.09.033522},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. M. Folegatti, M. Bittaye, A. Flaxman, F. R. Lopez, D. Bellamy, A. Kupke, C. Mair, R. Makinson, J. Sheridan, C. Rohde, S. Halwe, Y. Jeong, Y. Park, J. Kim, M. Song, A. Boyd, N. Tran, D. Silman, I. Poulton, M. Datoo, J. Marshal, Y. Themistocleous, A. Lawrie, R. Roberts, E. Berrie, S. Becker, T. Lambe, A. Hill, K. Ewer, and S. Gilbert, “Safety and immunogenicity of a candidate Middle East respiratory syndrome coronavirus viral-vectored vaccine: a dose-escalation, open-label, non-randomised, uncontrolled, phase 1 trial,” Lancet Infect Dis, vol. 20, iss. 7, p. 816–826, 2020.
    [Bibtex]
    @Article{Folegatti:20,
    author = {Pedro M Folegatti and Mustapha Bittaye and Amy Flaxman and Fernando Ramos Lopez and Duncan Bellamy and Alexandra Kupke and Catherine Mair and Rebecca Makinson and Jonathan Sheridan and Cornelius Rohde and Sandro Halwe and Yuji Jeong and Young-Shin Park and Jae-Ouk Kim and Manki Song and Amy Boyd and Nguyen Tran and Daniel Silman and Ian Poulton and Mehreen Datoo and Julia Marshal and Yrene Themistocleous and Alison Lawrie and Rachel Roberts and Eleanor Berrie and Stephan Becker and Teresa Lambe and Adrian Hill and Katie Ewer and Sarah Gilbert},
    title = {Safety and immunogenicity of a candidate {Middle East} respiratory syndrome coronavirus viral-vectored vaccine: a dose-escalation, open-label, non-randomised, uncontrolled, phase 1 trial},
    journal = {{Lancet Infect Dis}},
    year = {2020},
    volume = {20},
    number = {7},
    pages = {816--826},
    doi = {10.1016/s1473-3099(20)30160-2},
    publisher = {Elsevier {BV}},
    }
  • [DOI] M. Hoffmann, S. Schroeder, H. Kleine-Weber, M. A. Müller, C. Drosten, and S. Pöhlmann, “Nafamostat mesylate blocks activation of SARS-CoV-2: new treatment option for COVID-19,” Antimicrob Agents Chemother, vol. 64, p. e00754-20, 2020.
    [Bibtex]
    @Article{Hoffmann:20c,
    author = {Markus Hoffmann and Simon Schroeder and Hannah Kleine-Weber and Marcel A. Müller and Christian Drosten and Stefan Pöhlmann},
    title = {Nafamostat mesylate blocks activation of {SARS}-{CoV}-2: New treatment option for {COVID}-19},
    journal = {{Antimicrob Agents Chemother}},
    year = {2020},
    volume = {64},
    pages = {e00754-20},
    doi = {10.1128/aac.00754-20},
    publisher = {American Society for Microbiology},
    }
  • [DOI] P. V’Kovski, S. Steiner, M. Gultom, J. N. Kelly, J. Russeil, B. Mangeat, E. Cora, J. Pezoldt, M. Holwerda, A. Kratzel, L. Laloli, M. Wider, J. Portmann, T. T. N. Thao, N. Ebert, H. Stalder, R. Hartmann, V. Gardeux, D. Alpern, B. Deplancke, V. Thiel, and R. Dijkman, “Disparate temperature-dependent virus – host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium,” bioRxiv, 2020.
    [Bibtex]
    @Article{Vkovski:20,
    author = {Philip V'Kovski and Silvio Steiner and Mitra Gultom and Jenna N Kelly and Julie Russeil and Bastien Mangeat and Elisa Cora and Joern Pezoldt and Melle Holwerda and Annika Kratzel and Laura Laloli and Manon Wider and Jasmine Portmann and Tran Thi Nhu Thao and Nadine Ebert and Hanspeter Stalder and Rune Hartmann and Vincent Gardeux and Daniel Alpern and Bart Deplancke and Volker Thiel and Ronald Dijkman},
    title = {Disparate temperature-dependent virus - host dynamics for {SARS}-{CoV}-2 and {SARS}-{CoV} in the human respiratory epithelium},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.27.062315},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] R. Boudewijns, H. J. Thibaut, S. J. F. Kaptein, R. Li, V. Vergote, L. Seldeslachts, C. D. Keyzer, S. Sharma, S. Jansen, J. V. Weyenbergh, J. Ma, E. Martens, L. Bervoets, T. V. Buyten, S. Jacobs, Y. Liu, J. Martí-Carreras, B. Vanmechelen, T. Wawina-Bokalanga, L. Delang, J. Rocha-Pereira, L. Coelmont, W. Chiu, P. Leyssen, E. Heylen, D. Schols, L. Wang, L. Close, J. Matthijnssens, M. V. Ranst, G. Schramm, K. V. Laere, G. Opdenakker, P. Maes, B. Weynand, C. Cawthorne, G. V. Velde, Z. Wang, J. Neyts, and K. Dallmeier, “STAT2 signaling as double-edged sword restricting viral dissemination but driving severe pneumonia in SARS-CoV-2 infected hamsters,” bioRxiv, 2020.
    [Bibtex]
    @Article{Boudewijns:20,
    author = {Robbert Boudewijns and Hendrik Jan Thibaut and Suzanne J. F. Kaptein and Rong Li and Valentijn Vergote and Laura Seldeslachts and Carolien De Keyzer and Sapna Sharma and Sander Jansen and Johan Van Weyenbergh and Ji Ma and Erik Martens and Lindsey Bervoets and Tina Van Buyten and Sofie Jacobs and Yanan Liu and Joan Mart{\'{\i}}-Carreras and Bert Vanmechelen and Tony Wawina-Bokalanga and Leen Delang and Joana Rocha-Pereira and Lotte Coelmont and Winston Chiu and Pieter Leyssen and Elisabeth Heylen and Dominique Schols and Lanjiao Wang and Lila Close and Jelle Matthijnssens and Marc Van Ranst and Georg Schramm and Koen Van Laere and Ghislain Opdenakker and Piet Maes and Birgit Weynand and Christopher Cawthorne and Greetje Vande Velde and Zhongde Wang and Johan Neyts and Kai Dallmeier},
    title = {{STAT}2 signaling as double-edged sword restricting viral dissemination but driving severe pneumonia in {SARS}-{CoV}-2 infected hamsters},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.23.056838},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] P. J. Hotez, M. E. Bottazzi, S. K. Singh, P. J. Brindley, and S. Kamhawi, “Will COVID-19 become the next neglected tropical disease?,” PLoS Negl Trop Dis, vol. 14, iss. 4, p. e0008271, 2020.
    [Bibtex]
    @Article{Hotez:20,
    author = {Peter J. Hotez and Maria E. Bottazzi and Sunit K. Singh and Paul J. Brindley and Shaden Kamhawi},
    title = {Will {COVID}-19 become the next neglected tropical disease?},
    journal = {{PLoS Negl Trop Dis}},
    year = {2020},
    volume = {14},
    number = {4},
    pages = {e0008271},
    doi = {10.1371/journal.pntd.0008271},
    editor = {Sara Lustigman},
    publisher = {Public Library of Science ({PLoS})},
    }
  • [DOI] N. M. A. Okba, M. A. Müller, W. Li, C. Wang, C. H. GeurtsvanKessel, V. M. Corman, M. M. Lamers, R. S. Sikkema, E. de Bruin, F. D. Chandler, Y. Yazdanpanah, Q. L. Hingrat, D. Descamps, N. Houhou-Fidouh, C. B. E. M. Reusken, B. Bosch, C. Drosten, M. P. G. Koopmans, and B. L. Haagmans, “Severe acute respiratory syndrome coronavirus 2-specific antibody responses in coronavirus disease 2019 patients,” Emerg Infect Dis, vol. 26, iss. 7, p. 1478–1488, 2020.
    [Bibtex]
    @Article{Okba:20,
    author = {Nisreen M.A. Okba and Marcel A. Müller and Wentao Li and Chunyan Wang and Corine H. GeurtsvanKessel and Victor M. Corman and Mart M. Lamers and Reina S. Sikkema and Erwin de Bruin and Felicity D. Chandler and Yazdan Yazdanpanah and Quentin Le Hingrat and Diane Descamps and Nadhira Houhou-Fidouh and Chantal B.E.M. Reusken and Berend-Jan Bosch and Christian Drosten and Marion P.G. Koopmans and Bart L. Haagmans},
    title = {Severe Acute Respiratory Syndrome Coronavirus 2-Specific Antibody Responses in Coronavirus Disease 2019 Patients},
    journal = {{Emerg Infect Dis}},
    year = {2020},
    volume = {26},
    number = {7},
    pages = {1478--1488},
    doi = {10.3201/eid2607.200841},
    publisher = {Centers for Disease Control and Prevention ({CDC})},
    }
  • [DOI] R. Wölfel, V. M. Corman, W. Guggemos, M. Seilmaier, S. Zange, M. A. Müller, D. Niemeyer, T. C. Jones, P. Vollmar, C. Rothe, M. Hoelscher, T. Bleicker, S. Brünink, J. Schneider, R. Ehmann, K. Zwirglmaier, C. Drosten, and C. Wendtner, “Virological assessment of hospitalized patients with COVID-2019,” Nature, vol. 581, p. 465–469, 2020.
    [Bibtex]
    @Article{Wölfel:20,
    author = {Roman Wölfel and Victor M. Corman and Wolfgang Guggemos and Michael Seilmaier and Sabine Zange and Marcel A. Müller and Daniela Niemeyer and Terry C. Jones and Patrick Vollmar and Camilla Rothe and Michael Hoelscher and Tobias Bleicker and Sebastian Brünink and Julia Schneider and Rosina Ehmann and Katrin Zwirglmaier and Christian Drosten and Clemens Wendtner},
    title = {Virological assessment of hospitalized patients with {COVID}-2019},
    journal = {Nature},
    year = {2020},
    volume = {581},
    pages = {465--469},
    doi = {10.1038/s41586-020-2196-x},
    publisher = {Springer Science and Business Media {LLC}},
    }
  • [DOI] D. Bojkova, J. E. McGreig, K. McLaughlin, S. G. Masterson, M. Widera, V. Kraehling, S. Ciesek, M. N. Wass, M. Michaelis, and J. N. Cinatl, “SARS-CoV-2 and SARS-CoV differ in their cell tropism and drug sensitivity profiles,” bioRxiv, 2020.
    [Bibtex]
    @Article{Bojkova:20,
    author = {Denisa Bojkova and Jake E McGreig and Katie-May McLaughlin and Stuart G Masterson and Marek Widera and Verena Kraehling and Sandra Ciesek and Mark N Wass and Martin Michaelis and Jindrich N Cinatl},
    title = {{SARS}-{CoV}-2 and {SARS}-{CoV} differ in their cell tropism and drug sensitivity profiles},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.04.03.024257},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. R. Capobianchi, M. Rueca, F. Messina, E. Giombini, F. Carletti, F. Colavita, C. Castilletti, E. Lalle, L. Bordi, F. Vairo, E. Nicastri, G. Ippolito, C. E. M. Gruber, and B. Bartolini, “Molecular characterization of SARS-CoV-2 from the first case of COVID-19 in Italy,” Clin Microbiol Infect, vol. 26, iss. 7, p. 954–956, 2020.
    [Bibtex]
    @Article{Capobianchi:20,
    author = {M.R. Capobianchi and M. Rueca and F. Messina and E. Giombini and F. Carletti and F. Colavita and C. Castilletti and E. Lalle and L. Bordi and F. Vairo and E. Nicastri and G. Ippolito and C.E.M. Gruber and B. Bartolini},
    title = {Molecular characterization of {SARS}-{CoV}-2 from the first case of {COVID}-19 in {Italy}},
    journal = {{Clin Microbiol Infect}},
    year = {2020},
    volume = {26},
    number = {7},
    pages = {954--956},
    doi = {10.1016/j.cmi.2020.03.025},
    publisher = {Elsevier {BV}},
    }
  • [DOI] D. Blanco-Melo, B. E. Nilsson-Payant, W. Liu, S. Uhl, D. Hoagland, R. M. o, T. X. Jordan, K. Oishi, M. Panis, D. Sachs, T. T. Wang, R. E. Schwartz, J. K. Lim, R. A. Albrecht, and B. R. tenOever, “Imbalanced host response to SARS-CoV-2 drives development of COVID-19,” Cell, vol. 181, iss. 5, p. 1036–1045.e9, 2020.
    [Bibtex]
    @Article{Blanco-Melo:20a,
    author = {Daniel Blanco-Melo and Benjamin E. Nilsson-Payant and Wen-Chun Liu and Skyler Uhl and Daisy Hoagland and Rasmus M{\o}ller and Tristan X. Jordan and Kohei Oishi and Maryline Panis and David Sachs and Taia T. Wang and Robert E. Schwartz and Jean K. Lim and Randy A. Albrecht and Benjamin R. tenOever},
    title = {Imbalanced host response to {SARS}-{CoV}-2 drives development of {COVID}-19},
    journal = {{Cell}},
    year = {2020},
    volume = {181},
    number = {5},
    pages = {1036--1045.e9},
    doi = {10.1016/j.cell.2020.04.026},
    publisher = {Elsevier {BV}},
    }
  • [DOI] V. M. Corman, H. F. Rabenau, O. Adams, D. Oberle, M. B. Funk, B. Keller-Stanislawski, J. Timm, C. Drosten, and S. Ciesek, “SARS-CoV-2 asymptomatic and symptomatic patients and risk for transfusion transmission,” Transfusion, vol. 60, iss. 6, p. 1119–1122, 2020.
    [Bibtex]
    @Article{Corman:20a,
    author = {Victor M Corman and Holger F Rabenau and Ortwin Adams and Doris Oberle and Markus B Funk and Brigitte Keller-Stanislawski and Joerg Timm and Christian Drosten and Sandra Ciesek},
    title = {{SARS}-{CoV}-2 asymptomatic and symptomatic patients and risk for transfusion transmission},
    journal = {{Transfusion}},
    year = {2020},
    volume = {60},
    number = {6},
    pages = {1119--1122},
    doi = {10.1111/trf.15841},
    publisher = {Wiley},
    }
  • [DOI] D. Paraskevis, E. Kostaki, G. Magiorkinis, G. Panayiotakopoulos, G. Sourvinos, and S. Tsiodras, “Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event,” Infect Genet Evol, vol. 79, p. 104212, 2020.
    [Bibtex]
    @Article{Paraskevis:20,
    author = {D. Paraskevis and E. Kostaki and G. Magiorkinis and G. Panayiotakopoulos and G. Sourvinos and S. Tsiodras},
    title = {Full-genome evolutionary analysis of the novel corona virus (2019-{nCoV}) rejects the hypothesis of emergence as a result of a recent recombination event},
    journal = {{Infect Genet Evol}},
    year = {2020},
    volume = {79},
    pages = {104212},
    doi = {10.1016/j.meegid.2020.104212},
    publisher = {Elsevier {BV}},
    }
  • [DOI] A. Grifoni, J. Sidney, Y. Zhang, R. H. Scheuermann, B. Peters, and A. Sette, “A sequence homology and bioinformatic approach can predict candidate targets for immune responses to SARS-CoV-2,” Cell Host Microbe, vol. 27, iss. 4, p. 671–680.e2, 2020.
    [Bibtex]
    @Article{Grifoni:20a,
    author = {Alba Grifoni and John Sidney and Yun Zhang and Richard H. Scheuermann and Bjoern Peters and Alessandro Sette},
    title = {A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to {SARS}-{CoV}-2},
    journal = {{Cell Host Microbe}},
    year = {2020},
    volume = {27},
    number = {4},
    pages = {671--680.e2},
    doi = {10.1016/j.chom.2020.03.002},
    publisher = {Elsevier {BV}},
    }
  • [DOI] L. Zhang, D. Lin, X. Sun, U. Curth, C. Drosten, L. Sauerhering, S. Becker, K. Rox, and R. Hilgenfeld, “Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved $\alpha$-ketoamide inhibitors,” Science, vol. 368, iss. 6489, p. eabb3405, 2020.
    [Bibtex]
    @Article{Zhang:20,
    author = {Linlin Zhang and Daizong Lin and Xinyuanyuan Sun and Ute Curth and Christian Drosten and Lucie Sauerhering and Stephan Becker and Katharina Rox and Rolf Hilgenfeld},
    title = {Crystal structure of {SARS}-{CoV}-2 main protease provides a basis for design of improved $\alpha$-ketoamide inhibitors},
    journal = {Science},
    year = {2020},
    volume = {368},
    number = {6489},
    pages = {409--412},
    pages = {eabb3405},
    doi = {10.1126/science.abb3405},
    publisher = {American Association for the Advancement of Science ({AAAS})},
    }
  • [DOI] M. Hoffmann, H. Kleine-Weber, S. Schroeder, N. Krüger, T. Herrler, S. Erichsen, T. S. Schiergens, G. Herrler, N. Wu, A. Nitsche, M. A. Müller, C. Drosten, and S. Pöhlmann, “SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor,” Cell, vol. 181, iss. 2, p. 271–280.e8, 2020.
    [Bibtex]
    @Article{Hoffmann:20a,
    author = {Markus Hoffmann and Hannah Kleine-Weber and Simon Schroeder and Nadine Krüger and Tanja Herrler and Sandra Erichsen and Tobias S. Schiergens and Georg Herrler and Nai-Huei Wu and Andreas Nitsche and Marcel A. Müller and Christian Drosten and Stefan Pöhlmann},
    title = {{SARS}-{CoV}-2 Cell Entry Depends on {ACE}2 and {TMPRSS}2 and Is Blocked by a Clinically Proven Protease Inhibitor},
    journal = {Cell},
    year = {2020},
    volume = {181},
    number = {2},
    pages = {271--280.e8},
    doi = {10.1016/j.cell.2020.02.052},
    publisher = {Elsevier {BV}},
    }
  • [DOI] S. Pfaender, K. B. Mar, E. Michailidis, A. Kratzel, D. Hirt, P. V’Kovski, W. Fan, N. Ebert, H. Stalder, H. Kleine-Weber, M. Hoffmann, H. H. Hoffmann, M. Saeed, R. Dijkman, E. Steinmann, M. Wight-Carter, N. W. Hanners, S. Pohlmann, T. Gallagher, D. Todt, G. Zimmer, C. M. Rice, J. W. Schoggins, and V. Thiel, “LY6E impairs coronavirus fusion and confers immune control of viral disease,” bioRxiv, 2020.
    [Bibtex]
    @Article{Pfaender:20,
    author = {Stephanie Pfaender and Katrina B Mar and Eleftherios Michailidis and Annika Kratzel and Dagny Hirt and Philip V'Kovski and Wenchun Fan and Nadine Ebert and Hanspeter Stalder and Hannah Kleine-Weber and Markus Hoffmann and H. Heinrich Hoffmann and Mohsan Saeed and Ronald Dijkman and Eike Steinmann and Mary Wight-Carter and Natasha W Hanners and Stefan Pohlmann and Tom Gallagher and Daniel Todt and Gert Zimmer and Charles M Rice and John W Schoggins and Volker Thiel},
    title = {{LY}6{E} impairs coronavirus fusion and confers immune control of viral disease},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.03.05.979260},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] R. Woelfel, V. M. Corman, W. Guggemos, M. Seilmaier, S. Zange, M. A. Mueller, D. Niemeyer, P. Vollmar, C. Rothe, M. Hoelscher, T. Bleicker, S. Bruenink, J. Schneider, R. Ehmann, K. Zwirglmaier, C. Drosten, and C. Wendtner, “Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster,” medRxiv, 2020.
    [Bibtex]
    @Article{Woelfel:20,
    author = {Roman Woelfel and Victor Max Corman and Wolfgang Guggemos and Michael Seilmaier and Sabine Zange and Marcel A Mueller and Daniela Niemeyer and Patrick Vollmar and Camilla Rothe and Michael Hoelscher and Tobias Bleicker and Sebastian Bruenink and Julia Schneider and Rosina Ehmann and Katrin Zwirglmaier and Christian Drosten and Clemens Wendtner},
    title = {Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster},
    journal = {{medRxiv}},
    year = {2020},
    doi = {10.1101/2020.03.05.20030502},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] A. Grifoni, J. Sidney, Y. Zhang, R. H. Scheuermann, B. Peters, and A. Sette, “Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions,” bioRxiv, 2020.
    [Bibtex]
    @Article{Grifoni:20,
    author = {Alba Grifoni and John Sidney and Yun Zhang and Richard H Scheuermann and Bjoern Peters and Alessandro Sette},
    title = {Candidate targets for immune responses to 2019-{N}ovel {C}oronavirus ({nCoV}): sequence homology- and bioinformatic-based predictions},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.02.12.946087},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] M. Hoffmann, H. Kleine-Weber, N. Krüger, M. Müller, C. Drosten, and S. Pöhlmann, “The novel coronavirus 2019 (2019-nCoV) uses the SARS-coronavirus receptor ACE2 and the cellular protease TMPRSS2 for entry into target cells,” bioRxiv, 2020.
    [Bibtex]
    @Article{Hoffmann:20,
    author = {Markus Hoffmann and Hannah Kleine-Weber and Nadine Krüger and Marcel Müller and Christian Drosten and Stefan Pöhlmann},
    title = {The novel coronavirus 2019 (2019-{nCoV}) uses the {SARS}-coronavirus receptor {ACE}2 and the cellular protease {TMPRSS}2 for entry into target cells},
    journal = {{bioRxiv}},
    year = {2020},
    doi = {10.1101/2020.01.31.929042},
    publisher = {Cold Spring Harbor Laboratory},
    }
  • [DOI] G. Kampf, D. Todt, S. Pfaender, and E. Steinmann, “Persistence of coronaviruses on inanimate surfaces and its inactivation with biocidal agents,” J Hosp Infect, vol. 104, iss. 3, p. 246–251, 2020.
    [Bibtex]
    @Article{Kampf:20,
    author = {Günter Kampf and Daniel Todt and Stephanie Pfaender and Eike Steinmann},
    title = {Persistence of coronaviruses on inanimate surfaces and its inactivation with biocidal agents},
    journal = {{J Hosp Infect}},
    year = {2020},
    volume = {104},
    number = {3},
    pages = {246--251},
    doi = {10.1016/j.jhin.2020.01.022},
    publisher = {Elsevier {BV}},
    }
  • [DOI] C. B. E. M. Reusken, E. K. Broberg, B. Haagmans, A. Meijer, V. M. Corman, A. Papa, R. Charrel, C. Drosten, M. Koopmans, and K. L. and, “Laboratory readiness and response for novel coronavirus (2019-nCoV) in expert laboratories in 30 EU/EEA countries, January 2020,” Euro Surveill, vol. 25, iss. 6, p. 2000082, 2020.
    [Bibtex]
    @Article{Reusken:20,
    author = {Chantal B.E.M. Reusken and Eeva K. Broberg and Bart Haagmans and Adam Meijer and Victor M. Corman and Anna Papa and Remi Charrel and Christian Drosten and Marion Koopmans and Katrin Leitmeyer and},
    title = {Laboratory readiness and response for novel coronavirus (2019-{nCoV}) in expert laboratories in 30 {EU}/{EEA} countries, {J}anuary 2020},
    journal = {{Euro Surveill}},
    year = {2020},
    volume = {25},
    number = {6},
    pages = {2000082},
    doi = {10.2807/1560-7917.es.2020.25.6.2000082},
    publisher = {European Centre for Disease Control and Prevention ({ECDC})},
    }
  • [DOI] V. M. Corman, O. Landt, M. Kaiser, R. Molenkamp, A. Meijer, D. K. Chu, T. Bleicker, S. Brünink, J. Schneider, M. L. Schmidt, D. G. Mulders, B. L. Haagmans, B. van der Veer, S. van den Brink, L. Wijsman, G. Goderski, J. Romette, J. Ellis, M. Zambon, M. Peiris, H. Goossens, C. Reusken, M. P. Koopmans, and C. Drosten, “Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR,” Euro Surveill, vol. 25, iss. 3, p. 2000045, 2020.
    [Bibtex]
    @Article{Corman:20,
    author = {Victor M Corman and Olfert Landt and Marco Kaiser and Richard Molenkamp and Adam Meijer and Daniel KW Chu and Tobias Bleicker and Sebastian Brünink and Julia Schneider and Marie Luisa Schmidt and Daphne GJC Mulders and Bart L Haagmans and Bas van der Veer and Sharon van den Brink and Lisa Wijsman and Gabriel Goderski and Jean-Louis Romette and Joanna Ellis and Maria Zambon and Malik Peiris and Herman Goossens and Chantal Reusken and Marion PG Koopmans and Christian Drosten},
    title = {Detection of 2019 novel coronavirus (2019-{nCoV}) by real-time {RT}-{PCR}},
    journal = {{Euro Surveill}},
    year = {2020},
    volume = {25},
    number = {3},
    pages = {2000045},
    doi = {10.2807/1560-7917.es.2020.25.3.2000045},
    publisher = {European Centre for Disease Control and Prevention ({ECDC})},
    }
  • [DOI] H. Kleine-Weber, S. Schroeder, N. Krüger, A. Prokscha, H. Y. Naim, M. A. Müller, C. Drosten, S. Pöhlmann, and M. Hoffmann, “Polymorphisms in dipeptidyl peptidase 4 reduce host cell entry of Middle East respiratory syndrome coronavirus,” Emerg Microbes Infect, vol. 9, iss. 1, p. 155–168, 2020.
    [Bibtex]
    @Article{Kleine-Weber:20,
    author = {Hannah Kleine-Weber and Simon Schroeder and Nadine Krüger and Alexander Prokscha and Hassan Y. Naim and Marcel A. Müller and Christian Drosten and Stefan Pöhlmann and Markus Hoffmann},
    title = {Polymorphisms in dipeptidyl peptidase 4 reduce host cell entry of {Middle East} respiratory syndrome coronavirus},
    journal = {{Emerg Microbes Infect}},
    year = {2020},
    volume = {9},
    number = {1},
    pages = {155--168},
    doi = {10.1080/22221751.2020.1713705},
    publisher = {Informa {UK} Limited},
    }

2019

  • [DOI] H. R. Jonsdottir, S. Marti, D. Geerts, R. Rodriguez, V. Thiel, and R. Dijkman, “Establishment of primary transgenic human airway epithelial cell cultures to study respiratory virus-host interactions.,” Viruses, vol. 11, 2019.
    [Bibtex]
    @Article{Jonsdottir:19,
    author = {Jonsdottir, Hulda R and Marti, Sabrina and Geerts, Dirk and Rodriguez, Regulo and Thiel, Volker and Dijkman, Ronald},
    title = {Establishment of Primary Transgenic Human Airway Epithelial Cell Cultures to Study Respiratory Virus-Host Interactions.},
    journal = {Viruses},
    year = {2019},
    volume = {11},
    abstract = {Primary human airway epithelial cell (hAEC) cultures represent a universal platform to propagate respiratory viruses and characterize their host interactions in authentic target cells. To further elucidate specific interactions between human respiratory viruses and important host factors in the airway epithelium, it is important to make hAEC cultures amenable to genetic modification. However, the short and finite lifespan of primary cells in cell culture creates a bottleneck for the genetic modification of these cultures. In the current study, we show that the incorporation of the Rho-associated protein kinase (ROCK) inhibitor (Y-27632) during cell propagation extends the life span of primary human cells in vitro and thereby facilitates the incorporation of lentivirus-based expression systems. Using fluorescent reporters for fluorescence-activated cell sorting (FACS)-based sorting, we generated homogenously fluorescent hAEC cultures that differentiate normally after lentiviral transduction. As a proof-of-principle, we demonstrate that host gene expression can be modulated post-differentiation via inducible short hairpin (sh)RNA-mediated knockdown. Importantly, functional characterization of these transgenic hAEC cultures with exogenous poly (I:C), as a proxy for virus infection, demonstrates that such modifications do not influence the host innate immune response. Moreover, the propagation kinetics of both human coronavirus 229E (HCoV-229E) and human respiratory syncytial virus (hRSV) were not affected. Combined, these results validate our newly established protocol for the genetic modification of hAEC cultures, thereby unlocking a unique potential for detailed molecular characterization of virus-host interactions in human respiratory epithelium.},
    doi = {10.3390/v11080747},
    issue = {8},
    keywords = {human airway epithelial cell cultures; respiratory viruses; virus-host interactions},
    pmid = {31412613},
    }
  • [DOI] A. Viehweger, S. Krautwurst, K. Lamkiewicz, R. Madhugiri, J. Ziebuhr, M. Hölzer, and M. Marz, “Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.,” Genome Res, 2019.
    [Bibtex]
    @Article{Viehweger:19,
    author = {Viehweger, Adrian and Krautwurst, Sebastian and Lamkiewicz, Kevin and Madhugiri, Ramakanth and Ziebuhr, John and Hölzer, Martin and Marz, Manja},
    title = {Direct {RNA} nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.},
    journal = {{Genome Res}},
    year = {2019},
    abstract = {Sequence analyses of RNA virus genomes remain challenging owing to the exceptional genetic plasticity of these viruses. Because of high mutation and recombination rates, genome replication by viral RNA-dependent RNA polymerases leads to populations of closely related viruses, so-called "quasispecies." Standard (short-read) sequencing technologies are ill-suited to reconstruct large numbers of full-length haplotypes of (1) RNA virus genomes and (2) subgenome-length (sg) RNAs composed of noncontiguous genome regions. Here, we used a full-length, direct RNA sequencing (DRS) approach based on nanopores to characterize viral RNAs produced in cells infected with a human coronavirus. By using DRS, we were able to map the longest (∼26-kb) contiguous read to the viral reference genome. By combining Illumina and Oxford Nanopore sequencing, we reconstructed a highly accurate consensus sequence of the human coronavirus (HCoV)-229E genome (27.3 kb). Furthermore, by using long reads that did not require an assembly step, we were able to identify, in infected cells, diverse and novel HCoV-229E sg RNAs that remain to be characterized. Also, the DRS approach, which circumvents reverse transcription and amplification of RNA, allowed us to detect methylation sites in viral RNAs. Our work paves the way for haplotype-based analyses of viral quasispecies by showing the feasibility of intra-sample haplotype separation. Even though several technical challenges remain to be addressed to exploit the potential of the nanopore technology fully, our work illustrates that DRS may significantly advance genomic studies of complex virus populations, including predictions on long-range interactions in individual full-length viral RNA haplotypes.},
    doi = {10.1101/gr.247064.118},
    pmid = {31439691},
    }

2018

  • [DOI] J. Cui, F. Li, and Z. Shi, “Origin and evolution of pathogenic coronaviruses,” Nat Rev Microbiol, vol. 17, iss. 3, p. 181–192, 2018.
    [Bibtex]
    @Article{Cui:18,
    author = {Jie Cui and Fang Li and Zheng-Li Shi},
    title = {Origin and evolution of pathogenic coronaviruses},
    journal = {{Nat Rev Microbiol}},
    year = {2018},
    volume = {17},
    number = {3},
    pages = {181--192},
    doi = {10.1038/s41579-018-0118-9},
    publisher = {Springer Nature},
    }
  • [DOI] A. Viehweger, S. Krautwurst, K. Lamkiewicz, R. Madhugiri, J. Ziebuhr, M. Hölzer, and M. Marz, “Nanopore direct RNA sequencing reveals modification in full-length coronavirus genomes,” bioRxiv, 2018.
    [Bibtex]
    @Article{Viehweger:18,
    author = {Adrian Viehweger and Sebastian Krautwurst and Kevin Lamkiewicz and Ramakanth Madhugiri and John Ziebuhr and Martin Hölzer and Manja Marz},
    title = {Nanopore direct {RNA} sequencing reveals modification in full-length coronavirus genomes},
    journal = {{bioRxiv}},
    year = {2018},
    doi = {10.1101/483693},
    publisher = {Cold Spring Harbor Laboratory},
    }